View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21323_high_6 (Length: 529)
Name: NF21323_high_6
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_high_6 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 10 - 511
Target Start/End: Complemental strand, 28607805 - 28607304
Alignment:
| Q |
10 |
aagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607805 |
aagaatatcagttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
28607706 |
T |
|
| Q |
110 |
tttgcaattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaa |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607705 |
tttgcgattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaa |
28607606 |
T |
|
| Q |
210 |
caaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607605 |
caaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaag |
28607506 |
T |
|
| Q |
310 |
ggtgtgagctataactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcacccttt |
409 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607505 |
ggtgtgagctacgactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcacccttt |
28607406 |
T |
|
| Q |
410 |
ccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacatgta |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607405 |
ccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacatgta |
28607306 |
T |
|
| Q |
510 |
aa |
511 |
Q |
| |
|
|| |
|
|
| T |
28607305 |
aa |
28607304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 37 - 372
Target Start/End: Original strand, 7589803 - 7590136
Alignment:
| Q |
37 |
aaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgacttttgcaattataggatgcaccacaaag |
136 |
Q |
| |
|
||||| |||||| |||||||||| |||||||| ||| ||||| |||||||| ||||||||||| |||| | || |||| ||| || ||||||||| |
|
|
| T |
7589803 |
aaaaattcccatgaccacaaagagatattggttatcattccattaatctctttttgtcttgcgatcaatggccttgacaatgatacaatataccacaaag |
7589902 |
T |
|
| Q |
137 |
atgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaacaaataatatgaataaaatccaagcat |
236 |
Q |
| |
|
|||||||| |||| |||||| | | ||||||||| || | | | || || ||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
7589903 |
atgcaaattaaaataaatataatgacgattaacactgagtaaactccttttatatgattaattgaaaatggaagaaataacatgaataaaatccaagcat |
7590002 |
T |
|
| Q |
237 |
atgt--gtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctat-aactggaaaacc |
333 |
Q |
| |
|
|||| ||| ||||||| ||| ||||| | || ||||||| ||||||| ||||| ||||| || |||||||||| ||||| || ||||||||| |
|
|
| T |
7590003 |
atgtacgtccgtgatcattgctactgttagt-----ctcaccaagatcagtatagtgaagtatgagcccataaagggtgtgtgctataaattggaaaacc |
7590097 |
T |
|
| Q |
334 |
tgtcacagtgagaactaaagtccatattacacaagcatt |
372 |
Q |
| |
|
||||||| ||||||||||||| || |||| ||||||| |
|
|
| T |
7590098 |
tgtcacatcgagaactaaagtcagtaatacataagcatt |
7590136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 511
Target Start/End: Original strand, 7590191 - 7590238
Alignment:
| Q |
464 |
atgattccaaaaattgcaatagttgcagatttctttttaacatgtaaa |
511 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
7590191 |
atgattccgaaaatcgcaatggttgcagctttctttttaacatgtaaa |
7590238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 511
Target Start/End: Original strand, 439110 - 439599
Alignment:
| Q |
22 |
tatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgacttttgcaattata |
121 |
Q |
| |
|
|||| |||||||||| | ||| ||||| | ||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||| ||| |||| ||| |
|
|
| T |
439110 |
tatgaatgagaaaaccataaggcccataaagacaaaaactagttggttagcatcccattcatctctttctgtcttgcgatcaatgacctttacaatgata |
439209 |
T |
|
| Q |
122 |
ggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaacaaataatatga |
221 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
439210 |
ggatgcaccacaaagatggaaatgaatataaatattgcagtgcttaacgtcgtgtatattgcctctgtaccattaactgaaaatggaacaaataatacga |
439309 |
T |
|
| Q |
222 |
ataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctat |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||| |
|
|
| T |
439310 |
ataaaatccaagcatatgtgtcactgatcatggctgatgttaatgcaaccttcccaagaccagtatagagaagtttaagctcagacagggtgtggactac |
439409 |
T |
|
| Q |
322 |
aactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcaccctttccataaaaattt |
421 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || | || ||||| ||||| |||||||||| | ||||||||||||||| |||||||| ||| |
|
|
| T |
439410 |
aactggaaaacctgtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaatttt |
439509 |
T |
|
| Q |
422 |
cgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacatgtaaa |
511 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
439510 |
cgatgtagaaggtataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaa |
439599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 10 - 511
Target Start/End: Complemental strand, 13659180 - 13658679
Alignment:
| Q |
10 |
aagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
109 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||||||| | ||||| ||||| ||| | | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
13659180 |
aagaatatctgttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctctttcagtcttgcgatcaatgaac |
13659081 |
T |
|
| Q |
110 |
tttgcaattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaa |
209 |
Q |
| |
|
||| |||| || ||| |||||| ||| |||||||||||||||||||| || ||||||||||||| |||||||| | | |||||||| ||| ||||||| |
|
|
| T |
13659080 |
tttacaatgatcggacgcaccagaaaaatgcaaatgaaaacaaatatgacggtgcttaacactgagtatattgcccctacaccattaattgagaatggaa |
13658981 |
T |
|
| Q |
210 |
caaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaag |
309 |
Q |
| |
|
|| | | || |||||||||||| |||||||||||||||||||| || |||||||||| | |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
13658980 |
gaataactgtgtataaaatccaagaatatgtgtcactgatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagttttagctcagaaag |
13658881 |
T |
|
| Q |
310 |
ggtgtgagctataactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcacccttt |
409 |
Q |
| |
|
|||||||||| || || ||||| |||||||||||||| |||||||||| || | || | || |||| | |||||||| |||||||||||| ||| |
|
|
| T |
13658880 |
tgtgtgagctacaattgaaaaacttgtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccattt |
13658781 |
T |
|
| Q |
410 |
ccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacatgta |
509 |
Q |
| |
|
|||||||| ||||||||||||| |||||| | |||||||||||||||||||| ||||| || |||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
13658780 |
ccataaaattttcgatgtagaatgtataacggtggtcccatcaccattggaaagatgatcccggaaatcgcaatggttgcagctttctttttaacatgta |
13658681 |
T |
|
| Q |
510 |
aa |
511 |
Q |
| |
|
|| |
|
|
| T |
13658680 |
aa |
13658679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 10 - 511
Target Start/End: Complemental strand, 13651694 - 13651190
Alignment:
| Q |
10 |
aagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
109 |
Q |
| |
|
||||||| ||||||| |||||| ||||||| | ||||||| | ||||| |||||| ||| ||||||||||||||||||| |||||||| |||||| |
|
|
| T |
13651694 |
aagaatacctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctctttcaagcttgcgatcaatgacc |
13651595 |
T |
|
| Q |
110 |
tttgcaattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgc---acttgtaccattaactgaaaatg |
206 |
Q |
| |
|
||| | || |||||| |||||||||| ||||||||||||||||||| || || |||||||||| |||||||| | | ||||| ||| |||||||| |
|
|
| T |
13651594 |
tttacgatgataggacgcaccacaaaaatgcaaatgaaaacaaatacgacggtacttaacactgagtatattgccacaatactaccagtaattgaaaatg |
13651495 |
T |
|
| Q |
207 |
gaacaaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcaga |
306 |
Q |
| |
|
||| | || | || |||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||| || |
|
|
| T |
13651494 |
gaagagttattgtgtataaaacccaagaatatgtgtcactgatcatagctgttgttaatgccgtctgaccaagaccggtattaagaagtttgagctcgga |
13651395 |
T |
|
| Q |
307 |
aagggtgtgagctataactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcaccc |
406 |
Q |
| |
|
||| |||||||||| || || ||||| ||||| ||||||||||||||||||| |||| || |||| ||||| ||||||| |||| || ||||||||| |
|
|
| T |
13651394 |
aagtgtgtgagctacaattgaaaaacttgtcatagtgagaactaaagtccattgtacataaacattcattgtactttcttcgagtttaggtccatcacca |
13651295 |
T |
|
| Q |
407 |
tttccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacat |
506 |
Q |
| |
|
|| |||||||| | |||||||||| ||||||| || ||||| ||||| ||||| ||||| || |||| ||||| |||||| |||||||||||||| |
|
|
| T |
13651294 |
ttgccataaaagtatcgatgtagattgtataaaattggccccattaccatcggaaagatgatcccggaaatcgcaatggttgcatctttctttttaacat |
13651195 |
T |
|
| Q |
507 |
gtaaa |
511 |
Q |
| |
|
||||| |
|
|
| T |
13651194 |
gtaaa |
13651190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University