View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21323_low_10 (Length: 401)

Name: NF21323_low_10
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21323_low_10
NF21323_low_10
[»] chr5 (14 HSPs)
chr5 (3-213)||(11990925-11991140)
chr5 (3-90)||(16364323-16364410)
chr5 (3-99)||(10731616-10731711)
chr5 (22-82)||(29384954-29385014)
chr5 (3-87)||(7957936-7958020)
chr5 (280-320)||(11990818-11990858)
chr5 (365-401)||(11990727-11990763)
chr5 (340-384)||(11990790-11990834)
chr5 (3-99)||(16364521-16364617)
chr5 (122-178)||(32717509-32717565)
chr5 (143-177)||(6363297-6363331)
chr5 (6-66)||(11991608-11991668)
chr5 (152-216)||(16044782-16044846)
chr5 (30-78)||(29382282-29382330)
[»] chr7 (13 HSPs)
chr7 (117-215)||(29758822-29758922)
chr7 (3-99)||(11668212-11668308)
chr7 (7-90)||(39616949-39617032)
chr7 (141-213)||(7359966-7360038)
chr7 (21-87)||(11668611-11668677)
chr7 (152-208)||(41396206-41396261)
chr7 (12-99)||(8648665-8648752)
chr7 (146-213)||(22378016-22378080)
chr7 (143-213)||(11882610-11882680)
chr7 (143-197)||(38737664-38737718)
chr7 (117-213)||(8064641-8064737)
chr7 (151-196)||(24648682-24648727)
chr7 (6-87)||(44484793-44484873)
[»] chr4 (12 HSPs)
chr4 (3-99)||(54851906-54852002)
chr4 (9-90)||(6949665-6949746)
chr4 (117-213)||(41354055-41354151)
chr4 (6-82)||(54854490-54854566)
chr4 (143-216)||(856705-856778)
chr4 (4-90)||(54855645-54855731)
chr4 (3-99)||(54853903-54854000)
chr4 (146-201)||(19585455-19585510)
chr4 (3-74)||(54852332-54852403)
chr4 (149-201)||(24600705-24600757)
chr4 (3-99)||(54854913-54855010)
chr4 (120-201)||(25125185-25125270)
[»] chr3 (9 HSPs)
chr3 (6-99)||(18194661-18194754)
chr3 (143-213)||(38191719-38191789)
chr3 (4-90)||(40243867-40243953)
chr3 (3-99)||(27080138-27080235)
chr3 (143-206)||(13612826-13612889)
chr3 (3-90)||(18194900-18194987)
chr3 (117-173)||(11657491-11657548)
chr3 (13-82)||(40736833-40736902)
chr3 (128-201)||(6125687-6125760)
[»] chr2 (9 HSPs)
chr2 (3-99)||(34323590-34323685)
chr2 (7-79)||(16642065-16642136)
chr2 (3-87)||(10423643-10423727)
chr2 (117-216)||(42796345-42796445)
chr2 (117-213)||(25528823-25528917)
chr2 (157-213)||(14739873-14739929)
chr2 (35-99)||(34323408-34323472)
chr2 (147-208)||(8757957-8758015)
chr2 (49-99)||(21265922-21265972)
[»] chr6 (3 HSPs)
chr6 (28-90)||(30122919-30122981)
chr6 (117-213)||(15139316-15139413)
chr6 (117-196)||(7318584-7318664)
[»] chr1 (6 HSPs)
chr1 (125-215)||(30419500-30419590)
chr1 (117-213)||(19069861-19069957)
chr1 (117-213)||(19117751-19117847)
chr1 (143-202)||(9886009-9886068)
chr1 (4-90)||(2017865-2017951)
chr1 (152-201)||(40214308-40214357)
[»] chr8 (4 HSPs)
chr8 (3-90)||(22439235-22439322)
chr8 (143-213)||(18019495-18019565)
chr8 (146-201)||(29959622-29959677)
chr8 (143-203)||(15683284-15683344)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 11991140 - 11990925
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataatag-act 101  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | |    
T  11991140 gacacaaaaggatatattttttataatatgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattagatgatagaatt 11991041  T
Q  102 tatgnnnnnnnnnacaaggcaagagcaaagacatacaataaagtggctcccaactaagttggtacccaactctaatcta----gtgttaaatgctcataa 197  Q
    | |          | |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||    |||| ||||||||||||    
T  11991040 tttttttttttttataaggcaagagcaaagacataaaatagagtggctcccaactaagttggtatccaactctaatctagctggtgtcaaatgctcataa 11990941  T
Q  198 atatattattagaaaa 213  Q
    ||||||||||| ||||    
T  11990940 atatattattaaaaaa 11990925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 16364410 - 16364323
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    ||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||| |||||||    
T  16364410 gacacaacaggatataattttgatgacgtgtcaaaaaattaagaaggggtaagattgtatttttggtagacgttaagtttcataatta 16364323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 10731616 - 10731711
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    |||||||||| ||||| ||||||| ||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||||||||| | ||||||    
T  10731616 gacacaaaag-atataattttgatgacgtgtcaaaaaattaagaagaggtaagattgtatttttaatagacattaagttttataattagagaataga 10731711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 29385014 - 29384954
Alignment:
Q  22 ttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttt 82  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  29385014 ttgatgacgtgtcaaaaaattaagaaggggtaagattgtatttttggtagacattaagttt 29384954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 7958020 - 7957936
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataa 87  Q
    ||||||||| |||||| ||||||| |||||| |||||||| |||||   ||||||| ||||||| ||||||||||||||| ||||    
T  7958020 gacacaaaaagatataattttgatcacgtgttaaaaaattaagaagaaataagattgtatttttagtagacattaagtttaataa 7957936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 11990858 - 11990818
Alignment:
Q  280 cataaaatcaaatattatggttctacttaccaaagatatct 320  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11990858 cataaaatcaaatattatggttctacttaccaaagatatct 11990818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 11990763 - 11990727
Alignment:
Q  365 gaaaatttgaaccaacaagcatgcaagtagtcgacct 401  Q
    |||||||||||||||||||||||||||||||||||||    
T  11990763 gaaaatttgaaccaacaagcatgcaagtagtcgacct 11990727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 11990834 - 11990790
Alignment:
Q  340 acttagcaaagatatctagataccagaaaatttgaaccaacaagc 384  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  11990834 acttaccaaagatatctagataacagaaaatttgaaccaacaagc 11990790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 16364617 - 16364521
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    ||||||||| |||||| ||||||| |||  |||||||||| | || ||||| |||| ||||||| ||| ||||||||||| ||||||| | ||||||    
T  16364617 gacacaaaaagatataattttgatgacgactcaaaaaattaaaaatgggtaggattgtatttttggtacacattaagtttcataattagagaataga 16364521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 32717509 - 32717565
Alignment:
Q  122 aagagcaaagacatacaataaagtggctcccaactaagttggtacccaactctaatc 178  Q
    ||||| || |||||| || | |||||||||||||||||||||||||| |||||||||    
T  32717509 aagagaaatgacataaaaaagagtggctcccaactaagttggtaccctactctaatc 32717565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 6363297 - 6363331
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaat 177  Q
    |||||||||||||||||||||||||| ||||||||    
T  6363297 agtggctcccaactaagttggtacccgactctaat 6363331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 11991668 - 11991608
Alignment:
Q  6 acaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatattttt 66  Q
    |||||| | |||| ||| ||| ||||||||||| ||| ||||||||||||||||| |||||    
T  11991668 acaaaatggtataatttggatgacgtgtcaaaatattaagaaggggtaagattatgttttt 11991608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 16044846 - 16044782
Alignment:
Q  152 caactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaaggg 216  Q
    |||||||||||||| ||||||||||| |  ||| || |||||||| | ||||||||| |||||||    
T  16044846 caactaagttggtatccaactctaatttgttgtcaattgctcatataaatattattaaaaaaggg 16044782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 29382330 - 29382282
Alignment:
Q  30 gtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaa 78  Q
    ||||||||||||| |||| |||||||||| |||||||  ||||||||||    
T  29382330 gtgtcaaaaaattgagaaagggtaagattgtatttttaatagacattaa 29382282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 29758922 - 29758822
Alignment:
Q  117 aaggcaagagcaaagacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaat--gctcataaatatattattagaaaag 214  Q
    |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| |||||    
T  29758922 aaggcaagagcaaagacataaaatagagtggctccaaactaagttggtacccaactctaatctagtgtcaaatgcgctcataaatatattattaaaaaag 29758823  T
Q  215 g 215  Q
    |    
T  29758822 g 29758822  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 11668308 - 11668212
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    |||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||    
T  11668308 gacacaaaaggatataattttgatgacgtgtctaaaaattaagaaggggtaagattgtatttttggtagacattaagtttcataattagataataga 11668212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 39617032 - 39616949
Alignment:
Q  7 caaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    |||||||||||| ||||||| || |||||||||||| ||||||||||||| | ||||||| ||||||||||| ||| |||||||    
T  39617032 caaaaggatataattttgatgacatgtcaaaaaattaagaaggggtaagactgtatttttggtagacattaaatttcataatta 39616949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 7359966 - 7360038
Alignment:
Q  141 aaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    |||||||||| |||||||||| ||| |||||||||||||  ||| | ||||||||||||||||||||| ||||    
T  7359966 aaagtggctctcaactaagttagtatccaactctaatctcttgtcagatgctcataaatatattattaaaaaa 7360038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 11668677 - 11668611
Alignment:
Q  21 tttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataa 87  Q
    |||||| ||||||||| ||||| ||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  11668677 tttgatgacgtgtcaacaaattaagaagggttaagattgtatttttggtagacattaagtttcataa 11668611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 41396206 - 41396261
Alignment:
Q  152 caactaagttggtacccaactctaatctagtgttaaatgctcataaatatattatta 208  Q
    |||||||||||||||| |||||||||||  ||||||||| |||||||||||||||||    
T  41396206 caactaagttggtacc-aactctaatcttatgttaaatgttcataaatatattatta 41396261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 8648752 - 8648665
Alignment:
Q  12 ggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    ||||||| ||||||| ||||||||||| ||| ||||||| ||||||| ||||||  ||| | ||||||||| ||||||| | ||||||    
T  8648752 ggatataattttgatgacgtgtcaaaatatttagaagggataagattgtattttcggtaaatattaagtttcataattatagaataga 8648665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 22378080 - 22378016
Alignment:
Q  146 ggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    ||||||||||||| | ||||||||||||||||   |||| | ||||||||||||||||||||| ||||    
T  22378080 ggctcccaactaaatcggtacccaactctaat---gtgtcagatgctcataaatatattattaaaaaa 22378016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 11882680 - 11882610
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    |||||||| |||||| ||||||||| |||||| ||||  ||   |||||||||||||||||||||| ||||    
T  11882680 agtggctctcaactacgttggtaccgaactcttatcttatgccgaatgctcataaatatattattaaaaaa 11882610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 38737718 - 38737664
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataa 197  Q
    |||||||| ||| ||||||||||||| ||||||||||  ||| ||||||||||||    
T  38737718 agtggctctcaattaagttggtaccctactctaatcttttgtcaaatgctcataa 38737664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 8064641 - 8064737
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    |||||||||||||  |||||| || | ||||  ||||||||||||||||||  | | |||||||  ||| ||||||||||||||||||||||| ||||    
T  8064641 aaggcaagagcaagtgacataaaaaagagtgtatcccaactaagttggtactaatc-ctaatcttatgtcaaatgctcataaatatattattaaaaaa 8064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 24648727 - 24648682
Alignment:
Q  151 ccaactaagttggtacccaactctaatctagtgttaaatgctcata 196  Q
    |||||||||||||||||| |||||||||| |||| || ||||||||    
T  24648727 ccaactaagttggtaccctactctaatcttgtgtcaattgctcata 24648682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 44484873 - 44484793
Alignment:
Q  6 acaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataa 87  Q
    ||||||||||||| ||||  | | ||||||||| ||| ||||||| ||||||| ||||||| ||||||||||| ||| ||||    
T  44484873 acaaaaggatataattttactgatgtgtcaaaatattaagaaggg-taagattgtattttttgtagacattaaatttcataa 44484793  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 54851906 - 54852002
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    |||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||| | ||| ||| ||||||    
T  54851906 gacacaaaaggatataattttgatgacgtgtcaaaatattaagaaggggtaagattgtatttttggtagacattaagtttcaaaatgaaagaataga 54852002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 6949746 - 6949665
Alignment:
Q  9 aaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    |||||||||| | ||||||||||||||||||||| |||||||||| || | ||||||| |||||||||||||||||||||||    
T  6949746 aaaggatataatgttgataacgtgtcaaaaaattaagaaggggtacgactttatttttggtagacattaagttttataatta 6949665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 41354055 - 41354151
Alignment:
Q  117 aaggcaagagcaaagacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    |||| |||||||| |||||| || | |||| ||| ||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  41354055 aaggtaagagcaatgacataaaaaagagtgactcgcaactaagttggtacccaactctaatcttctgtcaaatgctcataaatatattattaaaaaa 41354151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 54854490 - 54854566
Alignment:
Q  6 acaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttt 82  Q
    ||||||||||||| ||||||||||| ||||||| | | ||||||||||||||| ||||||| |||||||||||||||    
T  54854490 acaaaaggatataattttgataacgcgtcaaaatactaagaaggggtaagattgtatttttggtagacattaagttt 54854566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 856778 - 856705
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaaggg 216  Q
    |||||||| ||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||  |||||||    
T  856778 agtggctcgcaactaagttggtacccaactctaatcttctgccaaatgctcataaatatattattgaaaaaggg 856705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 54855645 - 54855731
Alignment:
Q  4 acacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    ||||||||||||||| ||||||| | ||||||||| ||| |||| |||||| ||| |||||||  |||||||||||||| |||||||    
T  54855645 acacaaaaggatataattttgatgatgtgtcaaaatattaagaaagggtaaaattgtatttttgttagacattaagtttcataatta 54855731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 54853903 - 54854000
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaag-ttttataattaaataataga 99  Q
    ||||||||| |||||| ||||||| ||||||||||| ||| | ||||| ||||||| ||||||| |||| ||||| | ||| ||||||||||||||||    
T  54853903 gacacaaaatgatataattttgatgacgtgtcaaaatattaaaaagggataagattgtattttttgtaggcattacgatttcataattaaataataga 54854000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 19585455 - 19585510
Alignment:
Q  146 ggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatat 201  Q
    ||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||    
T  19585455 ggctcccaactaagttggtaccctactctaatcttttgtcaaatgctcataaatat 19585510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 54852332 - 54852403
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagaca 74  Q
    |||||||||||||||| |||| || ||||||||||| ||| ||||||| ||||||| ||||||| |||||||    
T  54852332 gacacaaaaggatataattttaatgacgtgtcaaaatattaagaagggttaagattgtatttttggtagaca 54852403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 24600757 - 24600705
Alignment:
Q  149 tcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatat 201  Q
    |||||||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  24600757 tcccaactaagttggtaccctactctaatcttttgttaagtgctcataaatat 24600705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 54854913 - 54855010
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgt-agacattaagttttataattaaataataga 99  Q
    ||||||||| ||| || ||||||| ||||||||||  ||| |||||| |||||||| |||||||  | ||||||||||||| ||||||| | ||||||    
T  54854913 gacacaaaatgatgtaattttgatgacgtgtcaaactattaagaaggagtaagattgtatttttttttagacattaagtttcataattagagaataga 54855010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 25125185 - 25125270
Alignment:
Q  120 gcaagagcaaa--gacatacaataaagtggctcccaactaagttggtacc--caactctaatctagtgttaaatgctcataaatat 201  Q
    |||||||||||  |||||| || | ||| |||||||||||||||||||||  | ||||||||||  ||| ||||||||||||||||    
T  25125185 gcaagagcaaaatgacataaaaaagagttgctcccaactaagttggtaccctctactctaatcttttgtaaaatgctcataaatat 25125270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 18194661 - 18194754
Alignment:
Q  6 acaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    ||||||||||||| |||||| ||||||||||||||||  | ||||||| |||| ||||||| ||||||||||||||| ||||||| ||||||||    
T  18194661 acaaaaggatatacttttgacaacgtgtcaaaaaattagggaggggtaggattgtatttttggtagacattaagtttcataattagataataga 18194754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 38191789 - 38191719
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    ||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  38191789 agtggcttccaactaagttggtacccaactctaatcttctgtcaaatgctcataaatatattattaaaaaa 38191719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 40243953 - 40243867
Alignment:
Q  4 acacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    ||||||||| ||||| ||||||| ||||||||||||||| | ||||||||||||| ||||||| ||||| ||||||||| |||||||    
T  40243953 acacaaaagaatataattttgatgacgtgtcaaaaaattaataaggggtaagattttatttttggtagaaattaagtttcataatta 40243867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 27080235 - 27080138
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattata-tttttcgtagacattaagttttataattaaataataga 99  Q
    |||||||||||| ||| ||||||| ||||||||||| ||| ||||||||||| ||| || ||||| ||| ||||||||||| ||||||| ||||||||    
T  27080235 gacacaaaaggaaataattttgatgacgtgtcaaaagattaagaaggggtaatattgtatttttttgtaaacattaagtttaataattagataataga 27080138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 13612826 - 13612889
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattat 206  Q
    ||||||| |||||||||||||||||||||||||| ||  ||  |||||||||||||||||||||    
T  13612826 agtggcttccaactaagttggtacccaactctaaacttctgccaaatgctcataaatatattat 13612889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 18194900 - 18194987
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    ||||||||| |||||| ||||||| ||||||||||||||| | |||| |  ||||| | ||||| ||||||||||| ||| |||||||    
T  18194900 gacacaaaatgatataattttgatgacgtgtcaaaaaattaataaggagctagattgtgtttttggtagacattaaatttcataatta 18194987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 11657491 - 11657548
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactc 173  Q
    |||||||||||||| |||||| || | ||||||| |||||||||||||||||||||||    
T  11657491 aaggcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactc 11657548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 40736902 - 40736833
Alignment:
Q  13 gatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttt 82  Q
    |||||| ||||||  | ||||||||||||| |||||| |||||||| |||||||  ||||||||||||||    
T  40736902 gatataattttgacgatgtgtcaaaaaattaagaaggagtaagattgtatttttgttagacattaagttt 40736833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 6125687 - 6125760
Alignment:
Q  128 aaagacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatat 201  Q
    ||||||||| || | |||||||| ||||||||| |||| || |||||||| |  ||| ||||||||||||||||    
T  6125687 aaagacataaaaaagagtggctcacaactaagtaggtatcctactctaatattttgtcaaatgctcataaatat 6125760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 34323590 - 34323685
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    ||||||||| |||||| ||||||| || |||||||||||| ||||||||||||||| || |||| ||||||||||||||| ||||||| ||||||||    
T  34323590 gacacaaaaagatataattttgatgacttgtcaaaaaattaagaaggggtaagattgta-ttttggtagacattaagtttcataattagataataga 34323685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 16642065 - 16642136
Alignment:
Q  7 caaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaag 79  Q
    |||||||||||| |||||||||  |||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  16642065 caaaaggatataattttgataat-tgtcaaaaaattaagaaggggtaagattgtatttttggtagacattaag 16642136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 10423643 - 10423727
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataa 87  Q
    ||||||||| |||||| ||||||| |||||| |||||||| |||||   ||||||| ||||||| ||||||||||||||| ||||    
T  10423643 gacacaaaaagatataattttgatgacgtgttaaaaaattaagaagatataagattgtatttttagtagacattaagtttaataa 10423727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 42796345 - 42796445
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaagg 215  Q
    |||||||||||||| |||||  || | |||| | ||||| ||||||||||||||| ||||||||  || |||||||||||| |||||||| || ||||||    
T  42796345 aaggcaagagcaaatgacatcaaaaagagtgacacccaattaagttggtacccaattctaatcttttgctaaatgctcatatatatattactaaaaaagg 42796444  T
Q  216 g 216  Q
    |    
T  42796445 g 42796445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 25528917 - 25528823
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    ||||||||| |||| |||||| || | |||||||| |||||||||||  ||||||||||||||   ||| ||||||| ||||||||||||||| ||||    
T  25528917 aaggcaagaacaaatgacataaaaaagagtggctcgcaactaagttgagacccaactctaatc---tgtcaaatgcttataaatatattattaaaaaa 25528823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 14739929 - 14739873
Alignment:
Q  157 aagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    ||||||||| |||||||||||||  | | ||||||||||||||||||||||| ||||    
T  14739929 aagttggtatccaactctaatcttctatcaaatgctcataaatatattattaaaaaa 14739873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 34323408 - 34323472
Alignment:
Q  35 aaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    |||||||| || |||||||||||| ||||||| ||| ||||||||||| ||||||| | ||||||    
T  34323408 aaaaaattaagtaggggtaagattgtatttttggtacacattaagtttcataattagagaataga 34323472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 8758015 - 8757957
Alignment:
Q  147 gctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattatta 208  Q
    |||||||||||||||||||| |||||||||||   ||| | || ||||||||||||||||||    
T  8758015 gctcccaactaagttggtactcaactctaatc---tgtcagatactcataaatatattatta 8757957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 21265972 - 21265922
Alignment:
Q  49 gggtaagattatatttttcgtagacattaagttttataattaaataataga 99  Q
    |||||||||| ||||||| ||||||||||||||| ||||||| | ||||||    
T  21265972 gggtaagattgtatttttggtagacattaagtttcataattagaaaataga 21265922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 30122981 - 30122919
Alignment:
Q  28 acgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  30122981 acgtatcaaaaaattaagaaggggtaagattatatttttggtagatattaagttttataatta 30122919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 15139413 - 15139316
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    ||||||||| |||| |||||| || | ||||||| |||||||| ||||| ||||||||||||||  ||| ||||| ||||||||||||||||| ||||    
T  15139413 aaggcaagaacaaatgacatataaaagagtggcttccaactaaattggtccccaactctaatcttttgtcaaatgttcataaatatattattaaaaaa 15139316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 7318664 - 7318584
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcata 196  Q
    |||||||||| ||| |||||| || | ||||||||||||||||||||||||||| |||||||||| | | |||||||||||    
T  7318664 aaggcaagagtaaatgacataaaaaagagtggctcccaactaagttggtacccatctctaatctattatcaaatgctcata 7318584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 30419500 - 30419590
Alignment:
Q  125 agcaaagacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaagg 215  Q
    |||||||||||| |||| ||| ||| ||| ||||||||||| | || ||||||||| ||| ||||| ||||||||||||||||| ||||||    
T  30419500 agcaaagacataaaatagagtagcttccatctaagttggtatctaattctaatctattgtcaaatgttcataaatatattattaaaaaagg 30419590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 19069861 - 19069957
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    |||||||||||||  |||||| || | ||||  |||||||||| |||||||| ||||||| |||  ||| ||||||||||||||||||||||| ||||    
T  19069861 aaggcaagagcaagtgacataaaaaagagtgtatcccaactaaattggtacc-aactctattcttatgtcaaatgctcataaatatattattaaaaaa 19069957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 19117751 - 19117847
Alignment:
Q  117 aaggcaagagcaaa-gacatacaataaagtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    |||||||||||||  |||||| || | ||||  |||||||||| |||||||| ||||||| |||  ||| ||||||||||||||||||||||| ||||    
T  19117751 aaggcaagagcaagtgacataaaaaagagtgtatcccaactaaattggtacc-aactctattcttatgtcaaatgctcataaatatattattaaaaaa 19117847  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 9886068 - 9886009
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatata 202  Q
    ||||||| ||||||||||||||| ||||||||||| |  ||| || ||||||||||||||    
T  9886068 agtggcttccaactaagttggtatccaactctaatattttgtcaagtgctcataaatata 9886009  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 2017865 - 2017951
Alignment:
Q  4 acacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    ||||||||  ||||| ||||||| | ||||||||| ||| ||||||||||| ||| ||| |||  || ||||||||||| |||||||    
T  2017865 acacaaaaatatatacttttgatgatgtgtcaaaatattaagaaggggtaatattgtatgtttgatacacattaagtttcataatta 2017951  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 40214357 - 40214308
Alignment:
Q  152 caactaagttggtacccaactctaatctagtgttaaatgctcataaatat 201  Q
    ||||||||||||||||| ||||||||||  ||| |||||||||| |||||    
T  40214357 caactaagttggtaccctactctaatcttttgtcaaatgctcatgaatat 40214308  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 22439322 - 22439235
Alignment:
Q  3 gacacaaaaggatatatttttgataacgtgtcaaaaaattcagaaggggtaagattatatttttcgtagacattaagttttataatta 90  Q
    ||||||||| |||||| ||||||| ||||||||||||||| | |||| |  ||||| | ||||| ||||||||||| ||| |||||||    
T  22439322 gacacaaaatgatataattttgatgacgtgtcaaaaaattaataaggagctagattgtgtttttggtagacattaaatttcataatta 22439235  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 18019495 - 18019565
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatattattagaaaa 213  Q
    ||||||| ||||||||||| ||| ||| |||||||||  ||| |||| |||||||||||||||||| ||||    
T  18019495 agtggcttccaactaagtttgtatccacctctaatcttctgtcaaatactcataaatatattattaaaaaa 18019565  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 29959622 - 29959677
Alignment:
Q  146 ggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatat 201  Q
    ||||||||| ||||||||||||  ||||||||||  ||| ||||||||||||||||    
T  29959622 ggctcccaattaagttggtaccatactctaatcttttgtcaaatgctcataaatat 29959677  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 15683284 - 15683344
Alignment:
Q  143 agtggctcccaactaagttggtacccaactctaatctagtgttaaatgctcataaatatat 203  Q
    |||| |||||||| |||||||||||||||||||||| | ||| || || ||||| ||||||    
T  15683284 agtgactcccaaccaagttggtacccaactctaatcaattgtcaattgttcatatatatat 15683344  T

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