View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21323_low_11 (Length: 397)
Name: NF21323_low_11
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 29110325 - 29110686
Alignment:
| Q |
20 |
gcggtctcatagaaatcatcatgatcatttggtgaagaactttttgggtaacttgcaggaaaacacctcaattgcctagttatgtggtattttctttgat |
119 |
Q |
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| T |
29110325 |
gcggtctcatagaaatcatcatgatcatttggtgaagaactttttgggtaacttgcaggaaaacacctcaattgcctagttatgtggtattttctttgat |
29110424 |
T |
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| Q |
120 |
tgtcaaatgatatatataaatgaagtaaccatgaagttgactcatgttatcctctagaaactggttctcaactcactgggtaaatatgattcacaattgg |
219 |
Q |
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| T |
29110425 |
tgtcaaatgatat--ataaatgaagtaaccatgaagttgactcatgttatcctctagaaactggttctcaactcactgggtaaatatgattcacaattgg |
29110522 |
T |
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| Q |
220 |
cttagttctattctccatctccaaacttgtgtttagaagcatgcataataaaatccaacacaaaataatagaaat-attgattctaaagtaactaatata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29110523 |
cttagttctattctccatctccaaacttgtgtttagaagcatgcataataaaatccaacacaaaataatagaaataattgattctaaagtaactaatata |
29110622 |
T |
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| Q |
319 |
gtaaacttttaactaatcataacgaacttgttaattaactaaacactattaaactaagggtcaataa |
385 |
Q |
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| T |
29110623 |
gtaaacttttaactaatcata---aacttgttaattaactaaacactattaaactaagggtcaataa |
29110686 |
T |
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