View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21323_low_12 (Length: 359)

Name: NF21323_low_12
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21323_low_12
NF21323_low_12
[»] chr7 (12 HSPs)
chr7 (1-340)||(39339807-39340146)
chr7 (1-340)||(39354628-39354966)
chr7 (1-338)||(39367229-39367558)
chr7 (1-337)||(39562857-39563192)
chr7 (16-221)||(39546180-39546384)
chr7 (1-221)||(39536864-39537084)
chr7 (18-221)||(1083487-1083689)
chr7 (250-325)||(1083370-1083447)
chr7 (268-337)||(39546051-39546120)
chr7 (22-110)||(39573622-39573710)
chr7 (284-336)||(39536735-39536787)
chr7 (69-110)||(39620956-39620997)
[»] chr4 (1 HSPs)
chr4 (61-107)||(2888180-2888226)
[»] chr1 (1 HSPs)
chr1 (271-326)||(2147484-2147539)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 39339807 - 39340146
Alignment:
Q  1 ccagcaccttgtacaaaagatctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttatt 100  Q
    |||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39339807 ccagcaccttgttcaaaagatctttattttcctactcagtactcgagatccttttttacacaatgtatggcttgcttatggaaacaacattggtcttatt 39339906  T
Q  101 ggcgcaatcctgaagataatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaa 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39339907 ggcgcaatcctgaatataatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaa 39340006  T
Q  201 tcaaattggaaaactagaaattatttacggcttcaaactcttgaatttgtaaaatttcatttcattattgcagtgaaaaggagcaagatctttttaatgc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39340007 tcaaattggaaaactagaaattttttacggcttcaaactcttgaatttgtaaaatttcatttcattattgcagtgaaaaggagcaagatctttttaatgc 39340106  T
Q  301 catggggtccatgtatgctgctgttatccttattggcgtc 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39340107 catggggtccatgtatgctgctgttatccttattggcgtc 39340146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 39354628 - 39354966
Alignment:
Q  1 ccagcaccttgtacaaaagatctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttatt 100  Q
    |||||||||||| |||||||||| ||||||||| |  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39354628 ccagcaccttgttcaaaagatctctattttccttcacagtactcgagatccttttttacacaatgtatggcttgcttatggaaacaacattggtcttatt 39354727  T
Q  101 ggcgcaatcctgaagataatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||     
T  39354728 ggcgcaatcctgaatataatgccataagatttctgtactcaaccgccgtggctgttttgcttggaagcatgttttgggaccttggctccaaaatgtaaat 39354827  T
Q  201 tcaaattggaaaactagaaattatttacggcttcaaactcttgaatttgtaaaatttcatttcattattgcagtgaaaaggagcaagatctttttaatgc 300  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39354828 tcaaattggaaaactag-aattttttacggcttcaaactcttgaatttgtaaaatttcatttcattattgcagtgaaaaggagcaagatctttttaatgc 39354926  T
Q  301 catggggtccatgtatgctgctgttatccttattggcgtc 340  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  39354927 catggggtccatgtattctgctgttatcctaattggcgtc 39354966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 39367229 - 39367558
Alignment:
Q  1 ccagcaccttgtacaaaagatctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttatt 100  Q
    |||||||||||| |||||||||| ||||||||| |   |||||| |||||||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  39367229 ccagcaccttgttcaaaagatctctattttccttcacggtactcgagatccttctttacacaatgtatagcctgcttatggaaacaacattggtcttatt 39367328  T
Q  101 ggcgcaatcctgaagataatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaa 200  Q
    |||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||| ||||| |||||||||||||| |    
T  39367329 ggcgcaatcctgaatataatgccataagatttctgtattcaactgcggtggctgttttgcttggaagcatgttttggaaccttggctccaaaatgtaaga 39367428  T
Q  201 tcaaattggaaaactagaaattatttacggcttcaaactcttgaatttgtaaaatttcatttcattattgcagtgaaaaggagcaagatctttttaatgc 300  Q
    |||||||| ||||||||||||| |||| |||||||        | |||||||||||||||||||| ||||||||||||| || |||||||||||||||||    
T  39367429 tcaaattgtaaaactagaaattttttatggcttca--------agtttgtaaaatttcatttcatcattgcagtgaaaaagaccaagatctttttaatgc 39367520  T
Q  301 catggggtccatgtatgctgctgttatccttattggcg 338  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  39367521 catgggatccatgtatgctgctgttatcctaattggcg 39367558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 39563192 - 39562857
Alignment:
Q  1 ccagcaccttgtacaaaagatctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttatt 100  Q
    |||||||||||| | ||||||||||||||| || |  ||||||| ||||||| ||  |||||||| ||||||||||||||||||||||||||| ||||||    
T  39563192 ccagcaccttgttcgaaagatctttattttgcttcacagtactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttatt 39563093  T
Q  101 ggcgcaatcctgaagataatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaa 200  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||| |    
T  39563092 ggcgcaatcctgaatataatgccattagatttctgtactcaaccgcagttgctgttttgtttggaagcatgttttgggaccttggctccaaaatgtaaga 39562993  T
Q  201 tcaaattggaaaactagaaattatttacggcttcaaactcttgaatttgtaaaatttcatttc-attattgcagtgaaaaggagcaagatctttttaatg 299  Q
    |||||||||||||||| ||||  || | ||||||||||||| || ||||||| ||||| | || ||| || |||||||||||| ||||||||||||||||    
T  39562992 tcaaattggaaaactataaat--ttaatggcttcaaactctcgagtttgtaatatttcgtatcaattttttcagtgaaaaggaacaagatctttttaatg 39562895  T
Q  300 ccatggggtccatgtatgctgctgttatccttattggc 337  Q
    ||||||||||||||||| ||||||| ||| | ||||||    
T  39562894 ccatggggtccatgtattctgctgtgatcgtaattggc 39562857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 39546384 - 39546180
Alignment:
Q  16 aaagatctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttattggcgcaatcctgaag 115  Q
    ||||||||||||||| || |  ||||||| ||||||| ||  ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| |     
T  39546384 aaagatctttattttacttcacagtactcgagatccttttggacacaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcctgtat 39546285  T
Q  116 ataatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaatcaaattggaaaact 215  Q
    | | ||||||||||||||||||||||||| | || ||||||||||| |||| |||||||||| ||||| ||||||| |||||| || |||||||||||||    
T  39546284 acactgccataagatttctgtactcaacctccgtagctgttttgcttggaaccatgttttggaaccttggctccaatatgtaagat-aaattggaaaact 39546186  T
Q  216 agaaat 221  Q
    ||||||    
T  39546185 agaaat 39546180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39537084 - 39536864
Alignment:
Q  1 ccagcaccttgtacaaaagatctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttatt 100  Q
    |||||||||||| | ||||||||||||||| || |  ||||||| ||||||| ||  ||||||||||||||||| || ||||||||||||||| | || |    
T  39537084 ccagcaccttgttcgaaagatctttattttacttcacagtactcgagatccttttggacacaatgtatggcttgtttgtggaaacaacattggtcctact 39536985  T
Q  101 ggcgcaatcctgaagataatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaa 200  Q
    |||||||||||| | | | ||||||||||||| ||||||| ||||| || |||||| |||| |||| |||||||||| ||||| |||||||||||||| |    
T  39536984 ggcgcaatcctgtatacactgccataagatttatgtactcgaccgcggtagctgttatgcttggaaccatgttttggaaccttggctccaaaatgtaaga 39536885  T
Q  201 tcaaattggaaaactagaaat 221  Q
    |||||||| ||||||||||||    
T  39536884 tcaaattgaaaaactagaaat 39536864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 1083689 - 1083487
Alignment:
Q  18 agatctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttattggcgcaatcctgaagat 117  Q
    ||||||||||||| || |  ||||||| ||||||| ||  |||||||| |||||||| |||||||||||||||||| |||| ||||||||||||| | |     
T  1083689 agatctttattttacttcacagtactcgagatccttttggacacaatgcatggcttgtttatggaaacaacattggtcttactggcgcaatcctgtatac 1083590  T
Q  118 aatgccataagatttctgtactcaaccgcagtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaatcaaattggaaaactag 217  Q
    | ||||||||||||||||||| ||| ||| || ||| ||||||| || | |||||||||| || || ||||||| |||||| || |||||| ||||||||    
T  1083589 actgccataagatttctgtacacaatcgcggtagctattttgcttgggaccatgttttggaacgttggctccaatatgtaagat-aaattgtaaaactag 1083491  T
Q  218 aaat 221  Q
    ||||    
T  1083490 aaat 1083487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 1083447 - 1083370
Alignment:
Q  250 taaaatttcatttca--ttattgcagtgaaaaggagcaagatctttttaatgccatggggtccatgtatgctgctgtt 325  Q
    ||||||||||| |||  |||||||||||||||||| ||||||||||||||||||||||| |||||||||  |||||||    
T  1083447 taaaatttcatatcaaattattgcagtgaaaaggaacaagatctttttaatgccatgggatccatgtattgtgctgtt 1083370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 39546120 - 39546051
Alignment:
Q  268 ttgcagtgaaaaggagcaagatctttttaatgccatggggtccatgtatgctgctgttatccttattggc 337  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||| |||| ||||||    
T  39546120 ttgcagtgaaaaggaacaagatctttttaatgccatggggtccatgtattcagccgttctcctaattggc 39546051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 39573710 - 39573622
Alignment:
Q  22 ctttattttcctactaagtactccagatcctgttttacacaatgtatggcttgcttatggaaacaacattggccttattggcgcaatcc 110  Q
    |||||||||||| | ||||| || || |||| |||||  |||||||||||||| |||||||||||||||||| |||| |||||||||||    
T  39573710 ctttattttccttcgaagtattcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc 39573622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 39536787 - 39536735
Alignment:
Q  284 caagatctttttaatgccatggggtccatgtatgctgctgttatccttattgg 336  Q
    |||||||||||||||||||||||||| |||||| |||||||| |||| |||||    
T  39536787 caagatctttttaatgccatggggtcaatgtattctgctgttctcctaattgg 39536735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 39620997 - 39620956
Alignment:
Q  69 ggcttgcttatggaaacaacattggccttattggcgcaatcc 110  Q
    ||||||||||||||||||||||||| |||| ||||| |||||    
T  39620997 ggcttgcttatggaaacaacattggtcttactggcggaatcc 39620956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 2888180 - 2888226
Alignment:
Q  61 caatgtatggcttgcttatggaaacaacattggccttattggcgcaa 107  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||    
T  2888180 caatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 2888226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 2147539 - 2147484
Alignment:
Q  271 cagtgaaaaggagcaagatctttttaatgccatggggtccatgtatgctgctgtta 326  Q
    |||| |||||||||||||| | || ||||| |||||||| ||||||||||||||||    
T  2147539 cagtaaaaaggagcaagatttattcaatgcaatggggtcaatgtatgctgctgtta 2147484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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