View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21323_low_13 (Length: 343)

Name: NF21323_low_13
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21323_low_13
NF21323_low_13
[»] chr5 (4 HSPs)
chr5 (18-175)||(27562029-27562186)
chr5 (174-334)||(27562234-27562394)
chr5 (18-174)||(36669084-36669239)
chr5 (174-334)||(36669288-36669449)
[»] chr8 (2 HSPs)
chr8 (178-334)||(26928772-26928930)
chr8 (60-142)||(26928621-26928703)
[»] chr1 (2 HSPs)
chr1 (33-175)||(29411587-29411725)
chr1 (174-334)||(29411773-29411938)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 27562029 - 27562186
Alignment:
Q  18 ggaagtgtgtacatattatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcattta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27562029 ggaagtgtgtacatattatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcattta 27562128  T
Q  118 ctcaagaaataatgacaaaatcattgcagatagctcaaatttacaaacctgaagttct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27562129 ctcaagaaataatgacaaaatcattgcagatagctcaaatttacaaacctgaagttct 27562186  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 27562234 - 27562394
Alignment:
Q  174 ctcagaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatacagaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaa 273  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27562234 ctcagaaagacgatcagaattcactatctatgacatcagccaagcatatatctcagacagaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaa 27562333  T
Q  274 acaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc 334  Q
    | |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27562334 ataaaaccttggcttcctcaattgaattcttcaacacagacaaaaccatggctctctctgc 27562394  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 36669084 - 36669239
Alignment:
Q  18 ggaagtgtgtacata-ttatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcattt 116  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||    
T  36669084 ggaagtgcgtacatacttatcatcatttagttcattctggaa-taaacatacatgaaaagatacttttagatggaaccct-gagtcaatgcatctcaatt 36669181  T
Q  117 actcaagaaataatgacaaaatcattgcagatagctcaaatttacaaacctgaagttc 174  Q
    ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  36669182 actgaagaaataatgacaaaaccattgcagatagttcaaatttacaaacctgaagttc 36669239  T

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Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 36669288 - 36669449
Alignment:
Q  174 ctcagaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatac--agaatcgacaaatgaatgacagaaggaaagaaatcgcaaa 271  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| |||| | ||  ||||||||||||||||||||||||||||||||||| | ||    
T  36669288 ctcagaaagacgatcagcattcactatctatgatatcagccaagcataaatcttagacagagaatcgacaaatgaatgacagaaggaaagaaatcac-aa 36669386  T
Q  272 aaacaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc 334  Q
    ||| |||||| |  ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  36669387 aaataaaaccttcacttcctcaattgaattcttcaactcagacaaacccatagctctctctgc 36669449  T

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Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 178 - 334
Target Start/End: Original strand, 26928772 - 26928930
Alignment:
Q  178 gaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatacaga--atcgacaaatgaatgacagaaggaaagaaatcgcaaaaaac 275  Q
    |||||||||||| |||||||||||| |||||||||| |||||||||||| | |||||  |||||||||||||||| ||||||||||||||| |||||||     
T  26928772 gaaagacgatcatcattcactatctgtgacatcagccaagcatatatcttagacagagaatcgacaaatgaatgagagaaggaaagaaatcacaaaaaat 26928871  T
Q  276 aaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc 334  Q
    |||||| ||||||||||||||||||| |||||  | ||||||   ||||||||||||||    
T  26928872 aaaaccttggcttcctcaattgaatttttcaagtcggacaaagtaatggctctctctgc 26928930  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 26928621 - 26928703
Alignment:
Q  60 taaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt 142  Q
    |||||| |||| |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||    
T  26928621 taaacacacataaaaatatacttttacatggaaccctagagtatatgcatctaaattactcaagaaataatgacaaaaccatt 26928703  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 29411587 - 29411725
Alignment:
Q  33 ttatcatcatttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatga 132  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| | | ||||  | ||| ||||||||||||||||||    
T  29411587 ttatcatcatttagttcattctggaaataaacac----gaaaagatacttttacatggaaccctataatgaatgtgtttcaattactcaagaaataatga 29411682  T
Q  133 caaaatcattgcagatagctcaaatttacaaacctgaagttct 175  Q
     || | |||||||||||||||||||| ||||||||||||||||    
T  29411683 taacaccattgcagatagctcaaattgacaaacctgaagttct 29411725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 29411773 - 29411938
Alignment:
Q  174 ctcagaaagacgatcagcattcactatctatgacatcagcgaagcatatatctcatac--agaatcgac--aaatgaatgacagaaggaaag-aaatcgc 268  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||| |||| | ||  |||||||||  |||||||||   ||||||||| ||||| |    
T  29411773 ctcagaaagacgatcagcattcacgatctatgacatcagccaaacatacatcttagacaaagaatcgacaaaaatgaatggtggaaggaaagaaaatcac 29411872  T
Q  269 aaaaaacaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgc 334  Q
    |||||   ||||| |||||||||||||||| | ||||||| | |||||||||||||| || |||||    
T  29411873 aaaaagttaaaccttggcttcctcaattgagtgcttcaactcggacaaacccatggccctatctgc 29411938  T

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