View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21323_low_16 (Length: 272)
Name: NF21323_low_16
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 23587349 - 23587088
Alignment:
| Q |
7 |
gaaacatcgccaaatcgcctaccaattaatcgcttagcatctgaaaacaccgattcaagtaaacacaatcagctaaggaacacaaccattcttaccaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587349 |
gaaacatcgccaaatcgcctaccaattaatcgcttagcatctgaaaacaccgattcaagtaaacacaatcagctaaggaacacaaccattcttaccaaat |
23587250 |
T |
|
| Q |
107 |
actgaagcaatacaattcccttttctactattatgctctgatgagc------atgaataaaattgtttatcgcccaaccaatgcaaaaccatgatcaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23587249 |
actgaagcaatacaattcccttttctactattatgctctgatgagcatgagcatgaataaaattgtttatcgcccaaccaatgcaaaactatgatcaaca |
23587150 |
T |
|
| Q |
201 |
ctctcactattataaacaataaaattcactttcctattattatgtatatgcagaataattta |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23587149 |
ctctcactattataaacaataaaattcactttcctattattatgtttatgcagaataattta |
23587088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 23596059 - 23596006
Alignment:
| Q |
180 |
aatgcaaaaccatgatcaacactctcactattataaacaataaaattcactttc |
233 |
Q |
| |
|
||||||||||||| ||||||| ||| || || |||||||||||||||||||||| |
|
|
| T |
23596059 |
aatgcaaaaccattatcaacaatcttacaatcataaacaataaaattcactttc |
23596006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 23596201 - 23596151
Alignment:
| Q |
7 |
gaaacatcgccaaatcgcctaccaattaatcgcttagcatctgaaaacacc |
57 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23596201 |
gaaacatcgctgattcgcctaccaattaaacgcttggcatctgaaaacacc |
23596151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University