View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21323_low_18 (Length: 253)
Name: NF21323_low_18
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 498722 - 498604
Alignment:
| Q |
1 |
ttctttaaaggggagaaggcggattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattccacttaatgctgaaaaatcgctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
498722 |
ttctttaaaggggagaaggcggattatgtaaggggaattctagatgcttgtggattgcaccctgatattggaattccacttattgctgaaaaatcactca |
498623 |
T |
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| Q |
101 |
taacaattagaaacaatga |
119 |
Q |
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||||||||||||||||||| |
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| T |
498622 |
taacaattagaaacaatga |
498604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 496659 - 496620
Alignment:
| Q |
198 |
acatcattgataatatgacatctcttacgactctggatct |
237 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
496659 |
acatctttgataatatgacatctcttacgactctggatct |
496620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 496661 - 496633
Alignment:
| Q |
160 |
taacatctttgataatatgacatctctta |
188 |
Q |
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| T |
496661 |
taacatctttgataatatgacatctctta |
496633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 25639105 - 25639192
Alignment:
| Q |
22 |
gattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattccacttaatgctgaaaaatcgctcataacaatta |
109 |
Q |
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| T |
25639105 |
gattatgtaagccgaattctagatgcttgtggattgcatcctgatattggaattccacttcttgctgaaaaatcagtcataaccatta |
25639192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 25477425 - 25477312
Alignment:
| Q |
1 |
ttctttaaaggggagaaggcggattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattccacttaatgctgaaaaatcgctca |
100 |
Q |
| |
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|||||| | ||||||| || |||||||||||| || ||||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||| || | |
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| T |
25477425 |
ttctttgacggggagagggaagattatgtaaggagaattctacatgcttgtggattgcagcctaatattggaattccacttcttgttgaaaaatcactaa |
25477326 |
T |
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| Q |
101 |
taacaattagaaac |
114 |
Q |
| |
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|||| ||||||||| |
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| T |
25477325 |
taactattagaaac |
25477312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 25434922 - 25434810
Alignment:
| Q |
1 |
ttctttaaaggggagaaggcggattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattccacttaatgctgaaaaatcgctca |
100 |
Q |
| |
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|||||||| ||||||| | |||||||||||| || ||||| ||| |||||| || | |||||||||| ||||||||| || ||| |||||||| | |
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| T |
25434922 |
ttctttaatggggagaggaaggattatgtaagcagaattctaaatgtttgtgggctgaatcctgatattgatattccacttcttgttgagaaatcgctaa |
25434823 |
T |
|
| Q |
101 |
taacaattagaaa |
113 |
Q |
| |
|
|||| |||||||| |
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|
| T |
25434822 |
taactattagaaa |
25434810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 25485984 - 25486076
Alignment:
| Q |
21 |
ggattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattccacttaatgctgaaaaatcgctcataacaattagaaa |
113 |
Q |
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|||||||||||| || ||||||||||||||| ||| | |||| |||| |||| |||| ||||||||||||||| ||||| |||||||| |
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| T |
25485984 |
ggattatgtaagccgaattctagatgcttgtgagttgaatcctggtattaatattcgacttcttgctgaaaaatcgctaataaccattagaaa |
25486076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35182407 - 35182332
Alignment:
| Q |
1 |
ttctttaaaggggagaaggcggattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattc |
76 |
Q |
| |
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||||||||||||||||||| |||||||| | | || |||||||||||||||| ||||||||| |||||||||||| |
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| T |
35182407 |
ttctttaaaggggagaaggaagattatgtgaagcgaattctagatgcttgtgggttgcaccctcatattggaattc |
35182332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35104451 - 35104376
Alignment:
| Q |
1 |
ttctttaaaggggagaaggcggattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattc |
76 |
Q |
| |
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|||||||||||||||| || | |||||||| | || |||||||||||||||||||||||||| | |||||||||| |
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| T |
35104451 |
ttctttaaaggggagagggaagtttatgtaaagagaattctagatgcttgtggattgcaccctcacattggaattc |
35104376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35044612 - 35044537
Alignment:
| Q |
1 |
ttctttaaaggggagaaggcggattatgtaaggggagttctagatgcttgtggattgcaccctgatattggaattc |
76 |
Q |
| |
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|||||||||||||||| || |||||||||| | || ||||||||||||||||||| ||||| | |||||||||| |
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| T |
35044612 |
ttctttaaaggggagagggaagattatgtaaagcgaattctagatgcttgtggattataccctcaaattggaattc |
35044537 |
T |
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