View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21323_low_20 (Length: 242)
Name: NF21323_low_20
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 35322015 - 35321837
Alignment:
| Q |
1 |
gttgactagatcttggacacatcggcaattgtagtattattgttgctttttcatttttggtaatttgaatgtttgtagttccacaaatacatgaaagttg |
100 |
Q |
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| T |
35322015 |
gttgactagatcttgaacacattggcaattgtagtattgttgttgctcttacattttttataagttgaatgtttgtagttccacaaatacatgaaagttg |
35321916 |
T |
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| Q |
101 |
ttatatatatgttatttgtttaatttgcttcaagtaatgaatggatcaaagtaattttatattggagtcaaattttgca |
179 |
Q |
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| T |
35321915 |
ttatatatatgttatttgtttaatttccttcaggtaatgaatggaccaaagtaattttatattggagtcaaatcttgca |
35321837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 35307014 - 35306840
Alignment:
| Q |
1 |
gttgactagatcttggacacatcggcaattgtagtattattgttgctttttcatttttggtaatttgaatgtttgtagttccacaaatacatgaaagttg |
100 |
Q |
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| T |
35307014 |
gttgactagatcttggacacattggcaattgtagtattgttgttactttttcatttttgataatttgaatgtttgtagttccacaaatacatgaaagttg |
35306915 |
T |
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| Q |
101 |
ttatatatatgttatttgtttaatttgcttcaagtaatgaatggatcaaagtaattttatattggagtcaaattttgca |
179 |
Q |
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| T |
35306914 |
ttatatgtatgttatttgt----tttgctttaagtaatgaacggatcaaagtaattttatgttggattcaaatcttgca |
35306840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35289261 - 35289174
Alignment:
| Q |
1 |
gttgactagatcttggacacatcggcaattgtagtattattgttgctttttcatttttggtaatttgaatgtttgtagttccacaaata |
89 |
Q |
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| T |
35289261 |
gttgactagatcttggacacattggcaattgtagtattgttgatgctacttta-atttgatagtttcaatgtttgtagttccacaaata |
35289174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 35311390 - 35311302
Alignment:
| Q |
3 |
tgactagatcttggacacatcggcaattgtagtattatt-gttgctttttcatttttggtaatttgaatgtttgtagttccacaaatac |
90 |
Q |
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| T |
35311390 |
tgacttgatcttagacacattgataatagtagtattgtttgttgcgttatcattttggataatttgaatgtttgtattttcacaaatac |
35311302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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