View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21323_low_21 (Length: 237)

Name: NF21323_low_21
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21323_low_21
NF21323_low_21
[»] chr5 (1 HSPs)
chr5 (1-218)||(498701-498918)
[»] chr7 (2 HSPs)
chr7 (7-217)||(25477410-25477614)
chr7 (118-218)||(25638894-25638994)
[»] chr2 (9 HSPs)
chr2 (4-46)||(35182389-35182431)
chr2 (125-210)||(35053677-35053762)
chr2 (145-218)||(35104568-35104641)
chr2 (6-46)||(35053564-35053604)
chr2 (156-218)||(35044740-35044802)
chr2 (7-46)||(35044597-35044636)
chr2 (7-46)||(35104436-35104475)
chr2 (7-46)||(35151734-35151773)
chr2 (12-46)||(35176438-35176472)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 498701 - 498918
Alignment:
Q  1 ccgccttctcccctttaaagaaacaagcaatatgcagaaatatttcactctctcttggctccagtccctcaaaacttatccgaagcactttcataattct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  498701 ccgccttctcccctttaaagaaacaagcaatatgcagaaatatttctctctctcttggctctagtccctcaaaacttatccgaagcactgtcataattct 498800  T
Q  101 tttgtccaatgatgggttattatgcaatccatccaaggtagctctccactgtgtggcatttcgggtacataagaaagaacccattactctaattgctaat 200  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  498801 tttgtccagtgatgggttattccgcaatccatccaaggtagctctccactgtgtggcatttcgggtacataagaaagaacccattactctaattgcttat 498900  T
Q  201 ggaagaccttgagcatat 218  Q
    ||||||||||||||||||    
T  498901 ggaagaccttgagcatat 498918  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 25477410 - 25477614
Alignment:
Q  7 tctcccctttaaagaaacaagcaatatgcagaaatatttcactctctcttggctccagtccctcaaaacttatccgaagcactttcataattcttttgtc 106  Q
    ||||||| | |||||| |||||||  |||| |||||||||  |||||||| |||| |||||||||||||||  ||||||||||||||||||||   | ||    
T  25477410 tctccccgtcaaagaagcaagcaacgtgcaaaaatatttctttctctcttagctctagtccctcaaaacttgaccgaagcactttcataattccactatc 25477509  T
Q  107 caatgatgggttattatgcaatccatccaaggtagctctccactgtgtggcatttcgggtacataagaaagaacccattactctaattgctaatggaaga 206  Q
          ||| ||||| ||| |||| ||||| |  |||||||| || | ||  ||||   || | ||||||||||||||||||||||||||||||||||||    
T  25477510 ------tggattattctgccatccttccaacgctgctctccattgggcggtttttcttttatacaagaaagaacccattactctaattgctaatggaaga 25477603  T
Q  207 ccttgagcata 217  Q
    |||||||||||    
T  25477604 ccttgagcata 25477614  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 25638994 - 25638894
Alignment:
Q  118 tattatgcaatccatccaaggtagctctccactgtgtggcatttcgggtacataagaaagaacccattactctaattgctaatggaagaccttgagcata 217  Q
    |||| ||||||| ||| |||| ||||||||||||  |||| ||||| | |   ||||||||||| ||||| |||||||| |||||||||||||||| |||    
T  25638994 tattctgcaatctatctaaggcagctctccactgcttggcgtttcgtgaatgcaagaaagaaccaattaccctaattgccaatggaagaccttgagtata 25638895  T
Q  218 t 218  Q
    |    
T  25638894 t 25638894  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 35182389 - 35182431
Alignment:
Q  4 ccttctcccctttaaagaaacaagcaatatgcagaaatatttc 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35182389 ccttctcccctttaaagaaacaagcaatatgcagaaatatttc 35182431  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 35053677 - 35053762
Alignment:
Q  125 caatccatccaaggtagctctccactgtgtggcatttcgggtacataagaaagaacccattactctaattgctaatggaagacctt 210  Q
    ||||| || ||||| | ||||||||||  | |||||||| ||||| ||||||||||||| ||||| |||||||||||| |||||||    
T  35053677 caatctatacaaggcatctctccactggttagcatttcgagtacacaagaaagaacccactactcgaattgctaatggtagacctt 35053762  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 35104568 - 35104641
Alignment:
Q  145 tccactgtgtggcatttcgggtacataagaaagaacccattactctaattgctaatggaagaccttgagcatat 218  Q
    ||||||| || |||| ||||||||| ||||||||||| | |||| |||||||||||||||||  ||||||||||    
T  35104568 tccactgagtagcatctcgggtacacaagaaagaaccaactactttaattgctaatggaagatgttgagcatat 35104641  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 35053564 - 35053604
Alignment:
Q  6 ttctcccctttaaagaaacaagcaatatgcagaaatatttc 46  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  35053564 ttctcccctttaaagaaacaagcaatatgcaaaaatatttc 35053604  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 35044740 - 35044802
Alignment:
Q  156 gcatttcgggtacataagaaagaacccattactctaattgctaatggaagaccttgagcatat 218  Q
    |||| ||||||||| ||||||||| | | ||||||||||||||||||||||  ||||||||||    
T  35044740 gcatctcgggtacacaagaaagaagcaactactctaattgctaatggaagatgttgagcatat 35044802  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 35044597 - 35044636
Alignment:
Q  7 tctcccctttaaagaaacaagcaatatgcagaaatatttc 46  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  35044597 tctcccctttaaagaagcaagcaatgtgcagaaatatttc 35044636  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 35104436 - 35104475
Alignment:
Q  7 tctcccctttaaagaaacaagcaatatgcagaaatatttc 46  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  35104436 tctcccctttaaagaaacaagcaatgtgcataaatatttc 35104475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 35151773 - 35151734
Alignment:
Q  7 tctcccctttaaagaaacaagcaatatgcagaaatatttc 46  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  35151773 tctccactttaaagaaacaagcaatgtgcagaaatatttc 35151734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 35176438 - 35176472
Alignment:
Q  12 cctttaaagaaacaagcaatatgcagaaatatttc 46  Q
    |||||||||||||| ||||||||||||||||||||    
T  35176438 cctttaaagaaacaggcaatatgcagaaatatttc 35176472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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