View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21323_low_5 (Length: 542)
Name: NF21323_low_5
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 24 - 529
Target Start/End: Original strand, 47117041 - 47117547
Alignment:
| Q |
24 |
gtccattttattattacccaaaaataaaattatagtttccgaggggtgatatat--atagtgtgatatcgttacttatgtaagaaattctgatagcaaat |
121 |
Q |
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| T |
47117041 |
gtccattttattattacccaaaaataaaattatagtttctgaggggtgatatatttatagtgtgatatcgtcacttatgtaagaaattctgatagcaaat |
47117140 |
T |
|
| Q |
122 |
gtgaagaaaaatatatcggtgaaggatggtataagtttacgagtgatagcactttgagtatttgtgacgtgttggtttttgaagtatcccgaattttctt |
221 |
Q |
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| T |
47117141 |
atgaagaaaaatatatcggtgaaggacggtataagtttacgagtgatagcagtttgagtatttgtgacgtgttggtttttgaagtatcccgaattttctt |
47117240 |
T |
|
| Q |
222 |
tctgctcgggttgttccttctgagatatgtcactgatctaatgaattgttattgtggtttctaatttttagtgttgttcttcttaaaaaagaatatgttg |
321 |
Q |
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| T |
47117241 |
tctgctcgggttgttccttctgagatatgtcactgatctgatgaattgttattgtggtttctaatttttagtgttgttctttttaaaaaagaatatgttg |
47117340 |
T |
|
| Q |
322 |
gtttcaatttgatcttttgttttcatgttttttgttggtggggaggactacttgattacaatgtttgtcttatggcacgtgtaatctttgtttatttcac |
421 |
Q |
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| T |
47117341 |
gtttcaatttgatcttttgttttcatgttttttgttggt-aggaggactacttgataacaatgtttgtcttatggcacgtgtaatatttgtttatttcac |
47117439 |
T |
|
| Q |
422 |
tattttcatcgttatgcttgaatcatgtagtgttaccattttgaaagcattgcgggtttaatgaagcggtgtttgcctaaaatgaaggtttaacattatg |
521 |
Q |
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| T |
47117440 |
tattttcatcgttatgcttgaatcatgtagtgttaccattttggaagcattgcgggtttaatgaagtggtgtttgcctaaaatgaaggtttaacattatg |
47117539 |
T |
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| Q |
522 |
ttaaaaat |
529 |
Q |
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| T |
47117540 |
ttaaaaat |
47117547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 80 - 510
Target Start/End: Complemental strand, 3507414 - 3506989
Alignment:
| Q |
80 |
agtgtgatatcgttacttatgtaagaaattctgatagcaaatgtgaagaaaaatatatcggtgaaggatggtataagtttacgagtgatagcactttgag |
179 |
Q |
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||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| | ||| || |
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| T |
3507414 |
agtgtgacttcgtcacttatgtaagaaatcatgatagcaaatgtgaataaaaatataccggtgaaggatggtataagtttccgagtgataatagtttaag |
3507315 |
T |
|
| Q |
180 |
tatttgtgacgtgttggtttttgaagtatcccgaattttctttctgctcgggttgttccttctgagatatgtcactgatctaatgaattgttattgtggt |
279 |
Q |
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| T |
3507314 |
ttttggtgacgtgttggttttttatgtatcccagattttctttctgttagggttgttccttctaagatatctcagtgatctaatgaattgttattgtggt |
3507215 |
T |
|
| Q |
280 |
ttctaatttttagtgttgttcttcttaaaaaagaatatgttggtttcaatttgatcttttgttttcatgttttttgttggtggggaggactacttgatta |
379 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
3507214 |
ttctaatttttagtgttgttcttcttaaaaaaataaatgttggtttcaatttgattctttgctttcatgtcttttgttggt-aggaggactacttgatta |
3507116 |
T |
|
| Q |
380 |
caatgtttgtcttatggcacgtgtaatctttgtttatttcactattttcatcgttatgcttgaatcatgtagtgttaccattttgaaagcattgcgggtt |
479 |
Q |
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|||||||||||||||||||||| ||||||||||||||| | |||||||| |||| ||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
3507115 |
taatgtttgtcttatggcacgtgcaatctttgtttattttattattttca----tatgtttgaatcatatagtgttaccattttagaagcattatgggtt |
3507020 |
T |
|
| Q |
480 |
taatgaagcggtgtttgcctaaaatgaaggt |
510 |
Q |
| |
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|||||||| |||||||||||||||||||||| |
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| T |
3507019 |
taatgaaggggtgtttgcctaaaatgaaggt |
3506989 |
T |
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