View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21323_low_7 (Length: 482)
Name: NF21323_low_7
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_7 |
 | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 204 - 450
Target Start/End: Original strand, 9270422 - 9270666
Alignment:
| Q |
204 |
ataacagagtggctgattgcaataaaataaatataatagtgctcattgcaatnnnnnnnnnttatctagattcttctctcaaaatgtctaagttagcgac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9270422 |
ataacagagtggctgattgcaataaaataaatataaaagtgctcattgcaataaaaaaa--ttatctagattcttctctcaaaatgcctaagttagcgac |
9270519 |
T |
|
| Q |
304 |
gcaccccttttggatatatgaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaacctcttagtccatcaagtgatt |
403 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9270520 |
tcactccttttggatatatgaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaacctcttagtccatcaagtgatt |
9270619 |
T |
|
| Q |
404 |
aaaattccatgcttttcaaaatacagaaaatgcctttttatgtcttc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9270620 |
aaaattccatgcttttcaaaatacagaaaatgcctttttatgtcttc |
9270666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 204 - 450
Target Start/End: Original strand, 6440517 - 6440758
Alignment:
| Q |
204 |
ataacagagtggctgattgcaataaaataaatataatagtgctcattgcaatnnnnnnnnnttatctagattcttctctcaaaatgtctaagttagcgac |
303 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||| |||| ||||||||||||| |
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|
| T |
6440517 |
ataacagagtggttgattgcaataaaataaatatattagtgcttattgcaataaaaaaaact-atctagattcttctctcagaatggctaagttagcgac |
6440615 |
T |
|
| Q |
304 |
gcaccccttttggatatatgaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaacctcttagtccatcaagtgatt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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|
| T |
6440616 |
tcaccccttttggatatatgaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaattaacctcttaatccatcaagtgatt |
6440715 |
T |
|
| Q |
404 |
aaaattccatgcttttcaaaatacagaaaatgcctttttatgtcttc |
450 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
6440716 |
aaaattccatacttttcaaaatacaga----gcctttttatgtcttc |
6440758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 9270214 - 9270015
Alignment:
| Q |
9 |
aagtttatgtttaacttttctttttnnnnnnngtttatgtttaaccgtataaagatacacactttttgatccnnnnnnnngaaggcacacacttcttgat |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
9270214 |
aagtttatgtttaacttttctttttaaaaaaagtttatgtttaaccgtataaagatacacactttttgacccaaaaaaaataaggcacacacttcttgat |
9270115 |
T |
|
| Q |
109 |
tagaaaaatcctaattaataagattaaatttgaagnnnnnnnnnnnnnnnnttttaattttgaagatttttccatttatttggagataataactcataac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9270114 |
tagaaaaatcctaattaataagattaaatttgaagaaaaaaatttaaaaaaaattaatttcgaagatttttccatttatttggagataataactcataac |
9270015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 6440313 - 6440182
Alignment:
| Q |
9 |
aagtttatgtttaacttttctttttnnnnnnngtttatgtttaaccgtataaagatacacactttttgatccnnnnnnnngaaggcacacacttcttgat |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||| ||||| || || |
|
|
| T |
6440313 |
aagtttatgtttaacttttcttttttaaaaa-gtttatgtttaaccgtataaagatacactgtttttga-cccaaaaaaagaaggcatgcacttttt-at |
6440217 |
T |
|
| Q |
109 |
tagaaaaatcctaattaataagattaaatttgaag |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6440216 |
tagaaaattcctaattaataagattaaatttgaag |
6440182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 223 - 450
Target Start/End: Complemental strand, 46514789 - 46514563
Alignment:
| Q |
223 |
caataaaataaatataatagtgctcattgcaatnnnnnnnnnttatctagattcttctctcaaaatgtctaagttagcgacgcaccccttttggatatat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
46514789 |
caataaaataaatataatagtgctcattgcaataaaaaaaa-ttatctagattcttctctcagaatgactaagttagcgactcaccccttttggatatat |
46514691 |
T |
|
| Q |
323 |
gaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaacctcttagtccatcaagtgattaaaattccatgcttttcaa |
422 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
46514690 |
aaaaatctaccgaaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaatctcttaatccatcaagcgattaaaattccatgcttttcaa |
46514591 |
T |
|
| Q |
423 |
aatacagaaaatgcctttttatgtcttc |
450 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
46514590 |
aatacagaaaatacctttttatgtcttc |
46514563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 46515010 - 46515215
Alignment:
| Q |
9 |
aagtttatgtttaacttttctttttnnnnnnngtttatgtttaaccgtataaagatacacactttttgatccnnnnnnnngaa-------ggcacacact |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
46515010 |
aagtttatgtttaacttttctttttaaaaaaagtttatgtttaaccgtataaagatacacactttttgacccaaaaaaaaaaaaaaaaaaggcacacaca |
46515109 |
T |
|
| Q |
102 |
tcttgattagaaaaatcctaattaataagattaaatttgaagnnnnnnnnnnnnnnnnttttaattttgaagatttttccatttatttggagataataac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
46515110 |
tcttgattagaaaaatcctaattaataagattaaatttgaagaaaaaaattcaaaaaattttaatttcgaagacttttccatttatatggagattataac |
46515209 |
T |
|
| Q |
202 |
tcataa |
207 |
Q |
| |
|
|||||| |
|
|
| T |
46515210 |
tcataa |
46515215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 204 - 450
Target Start/End: Original strand, 21805 - 22045
Alignment:
| Q |
204 |
ataacagagtggctgattgcaataaaataaatataatagtgctcattgcaatnnnnnnnnnttatctagattcttctctcaaaatgtctaagttagcgac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
21805 |
ataacagagtggctgattgcaataaaataaatataatagtgctcattgtaataaaaaaaa-ttatctagattcttctctcagaatgactaagttagcgac |
21903 |
T |
|
| Q |
304 |
gcaccccttttggatatatgaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaacctcttagtccatcaagtgatt |
403 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |
|
|
| T |
21904 |
tcaccccttttagatatatgaaaatctaccggaagaaattagcattagcgattagattcaaatgaaaaa-taaatcaacttcttaatccat---gtgatt |
21999 |
T |
|
| Q |
404 |
aaaattccatgcttttcaaaatacagaaaatgcctttttatgtcttc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22000 |
aaaattccatgcttttcaaaatacagaaaat-cctttttatgtcttc |
22045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 204 - 450
Target Start/End: Original strand, 14287829 - 14288075
Alignment:
| Q |
204 |
ataacagagtggctgattgcaataaaataaatataatagtg-ctcattgcaatnnnnnnnnnttatctagattcttctctcaaaatgtctaagttagcga |
302 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||||| || ||||||| ||| |||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
14287829 |
ataacggagtggctgattgcaataaaatagacataataatggctcattgtaataaaaaaaa-ttatctagattcttctcttagaatgactaagttagcga |
14287927 |
T |
|
| Q |
303 |
cgcaccccttttggatatatgaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaacctcttagtccatcaagtgat |
402 |
Q |
| |
|
| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14287928 |
ctcatcccttttggatatctgaaaatctaccggaagaaagtagcattagcgattagattcaaatgaaaaagtaaatcaacctcttaatccatcaagtgat |
14288027 |
T |
|
| Q |
403 |
taaaattccatgcttttcaaaatacagaaaatgcctttttatgtcttc |
450 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
14288028 |
taaaattccatgctttttagaatacagaaaatgcctttttatgtcttc |
14288075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 14287582 - 14287448
Alignment:
| Q |
9 |
aagtttatgtttaacttttctttttnnnnnnngtttatgtttaaccgtataaagatacacactttttgatccnnnnnnnn-gaaggcacacacttcttga |
107 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||| || || ||||| |||||||||| |
|
|
| T |
14287582 |
aagtttatgtttaaattttctttttataaaa-gtttatgtttaactgtataaaggtacacactttttgaccccaaaaaaaagatggcacgcacttcttga |
14287484 |
T |
|
| Q |
108 |
ttagaaaaatcctaattaataagattaaatttgaag |
143 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||| |
|
|
| T |
14287483 |
ttagaaaattcatatttaataatattaaatttgaag |
14287448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 265 - 449
Target Start/End: Original strand, 66985 - 67169
Alignment:
| Q |
265 |
ttatctagattcttctctcaaaatgtctaagttagcgacgcaccccttttggatatatgaaaatctaccggaagaaagtagcattagcgattagattcaa |
364 |
Q |
| |
|
|||||||||||||| ||| | |||| |||||||||||| || || |||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
66985 |
ttatctagattcttatctaagaatgattaagttagcgactcatccgttttggatatctgaaaatctgttggaagaaagtagcattagcaattagattcaa |
67084 |
T |
|
| Q |
365 |
atgaaaaagtaaatcaacctcttagtccatcaagtgattaaaattccatgcttttcaaaatacagaaaatgcctttttatgtctt |
449 |
Q |
| |
|
||||||| || ||||||||| || ||||||||| ||||||||||||| ||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
67085 |
atgaaaaggtgtatcaacctcataatccatcaagccattaaaattccattctttttaaaatctagaaaatgcttttttatgtctt |
67169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 66628 - 66583
Alignment:
| Q |
98 |
cacttcttgattagaaaaatcctaattaataagattaaatttgaag |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66628 |
cacttcttgattagaaaaatcctaattaataagattaaatttgaag |
66583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 15273411 - 15273514
Alignment:
| Q |
41 |
gtttatgtttaaccgtataaagatacacactttttgatccnnnnnnnn-gaaggcacacacttcttgattagaaaaatcctaattaataagattaaattt |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || || |||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
15273411 |
gtttatgtttaaccatataaagatacacacttttcgacccaaaaaaaaagaaggcacgcacttctggattagaaaaatcctaattaataagaataaattt |
15273510 |
T |
|
| Q |
140 |
gaag |
143 |
Q |
| |
|
|||| |
|
|
| T |
15273511 |
gaag |
15273514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 15453780 - 15453883
Alignment:
| Q |
41 |
gtttatgtttaaccgtataaagatacacactttttgatccnnnnnnnn-gaaggcacacacttcttgattagaaaaatcctaattaataagattaaattt |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || || |||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
15453780 |
gtttatgtttaaccatataaagatacacacttttcgacccaaaaaaaaagaaggcacgcacttctggattagaaaaatcctaattaataagaataaattt |
15453879 |
T |
|
| Q |
140 |
gaag |
143 |
Q |
| |
|
|||| |
|
|
| T |
15453880 |
gaag |
15453883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 441
Target Start/End: Original strand, 31947 - 32060
Alignment:
| Q |
330 |
taccggaagaaagtagcattagcgattagattcaaatgaaaaa-gtaaatcaacctcttag-tccatcaagtgattaaaattccatgcttttcaaaatac |
427 |
Q |
| |
|
|||| |||||||||||||||| | | ||||||||||| ||||| || |||||||| | || ||||||||||| |||||| |||||||||||||||| || |
|
|
| T |
31947 |
taccagaagaaagtagcattaacaactagattcaaataaaaaaagtgaatcaaccccataaatccatcaagtggttaaaactccatgcttttcaaaacac |
32046 |
T |
|
| Q |
428 |
agaaaatgcctttt |
441 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
32047 |
acaaaatgcatttt |
32060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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