View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21323_low_8 (Length: 465)
Name: NF21323_low_8
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Complemental strand, 34572102 - 34571668
Alignment:
| Q |
10 |
agatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcatttcaggtcgaaattctttacaagataatgcctggcgaagat |
109 |
Q |
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| T |
34572102 |
agatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcatttcgggtcgaaattctttacaagataatgcctggcgaagat |
34572003 |
T |
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| Q |
110 |
gtgtcttgtgtaaaggaatcctcacatcttgtgataacgtggggaatggttttcctacaaagcacaatgatgaaaggtgtgatagagaatggggctaaac |
209 |
Q |
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| T |
34572002 |
gtgtcttgtgtaaaggaatcctcacatcttgtgataacgtggggaatggttttcctacaaagcacaatgatgaaaggtgtgatagagaatggggctaaac |
34571903 |
T |
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| Q |
210 |
aaggtttgaaggagagttttgatcagtttgctaacctacttgctcagaggttcaaggtgctagataaggaggatttgataaacaaagaacatttgttggc |
309 |
Q |
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| T |
34571902 |
aaggtttgaaggagagttttgatcagtttgctaacctacttgctcagaggttcaaggtgctagataaggaggatttgataaacaaagaacatttgttggc |
34571803 |
T |
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| Q |
310 |
aactttgcagacagagagccagtggaattggtggcaggcaattacatacttctggaatttcacagtagtttccacattttttatgtgtttatatgtgttg |
409 |
Q |
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| T |
34571802 |
aactttgcagacagagagccagtggaattggtggcaggcaattacatacttctggaatttcacagtagtttccacattttttatgtgtttatatgtgttg |
34571703 |
T |
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| Q |
410 |
ctgcatattttaaggtgtggtccaagtcaacctcg |
444 |
Q |
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| T |
34571702 |
ctgcatattttaaggtgtggtccaagtcaacctcg |
34571668 |
T |
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