View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21323_low_9 (Length: 435)
Name: NF21323_low_9
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 11673123 - 11672717
Alignment:
| Q |
13 |
aatatcttaatttgtactgaaacatccacatgcgtcaaatagtattttattgtcaacaaagaaaaataatacttctcgtaaaaaatactcaaaatagtgc |
112 |
Q |
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| T |
11673123 |
aatatcttaatttgtactgaaacatccacatgcgtcaaatagtattttattgtcatcaaagaaaaataatacttctcgtaaaaaatactcaaaatagtgc |
11673024 |
T |
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| Q |
113 |
ctattttattatatccctttcggatacaaacattaactccaatgcaaaatagataccattgccatacaatacaagtccaaattactcttattcttatatt |
212 |
Q |
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| T |
11673023 |
ctattttattatatccctttcggatacaaacattagctccaatgcaaaatagataccattgccatacaatacaagtccaaattactcttagtcttatatt |
11672924 |
T |
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| Q |
213 |
ttaagaatattcttgacaaatggaagtgttggatgttgatcatgattagctagattaatcaattaagattctttagtgaaggactagcggaatgaccatt |
312 |
Q |
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| T |
11672923 |
ttaagaatattcttgacaaatggaagtgttggatgttgatcatgattagctagattaatcaattaagattctttagtgaaggactagcggaatgaccatt |
11672824 |
T |
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| Q |
313 |
tcaaaagatgaccatttcagttttcacttaggacggcatatttgtgcttttggactcacatccaacatgtaaaaattgcatataaatatgccttaataca |
412 |
Q |
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| T |
11672823 |
tcaaaagatgaccatttcagttttcacttaggacggcatatttgtgcttttggactcacatccaacacgtaaaaattgcatataaatatgccttaataca |
11672724 |
T |
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| Q |
413 |
aaccaat |
419 |
Q |
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| T |
11672723 |
aaccaat |
11672717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 11730192 - 11730138
Alignment:
| Q |
307 |
accatttcaaaagatgaccatttcagttttcacttaggacggcatatttgtgctt |
361 |
Q |
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| T |
11730192 |
accatttcataagatgaccatttcatttttttgttaggacggcatatttgtgctt |
11730138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 11687254 - 11687307
Alignment:
| Q |
307 |
accatttcaaaagatgaccatttcagttttcacttaggacggcatatttgtgct |
360 |
Q |
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| T |
11687254 |
accatttcataagatgaccatttcatttttttgttaggacggcatatttgtgct |
11687307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 11721041 - 11720999
Alignment:
| Q |
316 |
aaagatgaccatttcagttttcacttaggacggcatatttgtg |
358 |
Q |
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| T |
11721041 |
aaagatgaccatttcatttttaagttaggacggcatatttgtg |
11720999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 11721151 - 11721117
Alignment:
| Q |
266 |
attaatcaattaagattctttagtgaaggactagc |
300 |
Q |
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| T |
11721151 |
attaatcaattaagattatttagtgaaggactagc |
11721117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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