View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21324_high_1 (Length: 576)
Name: NF21324_high_1
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 558
Target Start/End: Original strand, 24726931 - 24727475
Alignment:
| Q |
11 |
cacagaggacgggacaggtcaagaggttcagacggtcaacaaggagcggcgacaggcaacgaacaacatcgatttattggttttaagttattgggtcttt |
110 |
Q |
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| T |
24726931 |
cacagaggacgggacaggtcaagaggttcagacggtcagcaaggagcggcgacaggcaacgaacaacatcgatttattggttttaagttattgggtcttt |
24727030 |
T |
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| Q |
111 |
gtactgctaagttagcagttcattatgttttatatatactctcttgtaatcttttataattccaacctattggtattctatgaaactttatatcgtctta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24727031 |
gtactgctaagttagcagttcattatgttttatatatactctcttgtaaccttttataattccaacctattggtattctatgaaactttatatcgtctta |
24727130 |
T |
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| Q |
211 |
ttctatttgattatctatattgttaacaatatcaactacgaatggattaaattatgatatataagatatgtaattcatatattccttggtctaaagattt |
310 |
Q |
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| T |
24727131 |
ttctatttgattatctatattgttaacaatatcaactacgaatggattaaattatgatatataagatatgtaattcatatattccttggtctaaagattt |
24727230 |
T |
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| Q |
311 |
tcaatggagatgtggtgtcaatatctcttacaagtattggatcattaacacgttgtttctctcaatgcttcccaaacaccccaatcaattgtatcaaagc |
410 |
Q |
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| T |
24727231 |
tcaatggagatgtggtgtcaatatctcttacaagtattggatcattaacac---gtttctctcaatggttcccattcaccccaatcaattgtatcaaagc |
24727327 |
T |
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| Q |
411 |
tctagttcaattcaaggataggcattcttagtatgctatgtgttgtagctatttgatcttccacgtcaaacaagacaggagaaaatatgaaagagttgtt |
510 |
Q |
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| T |
24727328 |
tctagttcaattcaaggataggcattcttagtatgctatgtgttgtagctatttgatcttccacgtcaaacaagacaggagaaaatatgaaagagttgtt |
24727427 |
T |
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| Q |
511 |
ttggaaattatttggctataaaaattttggtaattttacgtgactatt |
558 |
Q |
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| T |
24727428 |
ttggaaattatttggctataaaaattttggtaattttacgtgactatt |
24727475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 40901296 - 40901355
Alignment:
| Q |
7 |
ggagcacagaggacgggacaggtcaagaggttcagacggtcaacaaggagcggcgacagg |
66 |
Q |
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| T |
40901296 |
ggagcacagaggacgagacgggtcaagaggttcagagggttatcgaggagcggcgacagg |
40901355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 2979632 - 2979713
Alignment:
| Q |
115 |
tgctaagttagcagttcattatgttttatatatactctcttgtaatcttttataattccaacctattggtattctatgaaac |
196 |
Q |
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| T |
2979632 |
tgctaagttagtagtatattaggttttatacatattctcttgtaatcttttgtaatgttaagctattgatattccatgaaac |
2979713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 19254713 - 19254672
Alignment:
| Q |
14 |
agaggacgggacaggtcaagaggttcagacggtcaacaagga |
55 |
Q |
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| T |
19254713 |
agaggacgagacaggtcaagaggttcagacgggcaacgagga |
19254672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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