View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21324_high_12 (Length: 301)

Name: NF21324_high_12
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21324_high_12
NF21324_high_12
[»] chr6 (20 HSPs)
chr6 (20-301)||(33261780-33262061)
chr6 (20-157)||(33283836-33283973)
chr6 (51-300)||(33387351-33387615)
chr6 (57-157)||(33282143-33282243)
chr6 (170-301)||(33409303-33409428)
chr6 (54-157)||(33397941-33398044)
chr6 (54-157)||(33408851-33408954)
chr6 (162-300)||(33303803-33303939)
chr6 (152-301)||(33358220-33358375)
chr6 (170-297)||(33398391-33398512)
chr6 (162-274)||(31563386-31563498)
chr6 (233-301)||(33396806-33396874)
chr6 (233-301)||(33407756-33407824)
chr6 (235-301)||(33284987-33285053)
chr6 (236-293)||(33271219-33271276)
chr6 (215-301)||(28870727-28870812)
chr6 (216-294)||(33281091-33281169)
chr6 (174-301)||(9166082-9166205)
chr6 (54-87)||(33358149-33358182)
chr6 (215-301)||(33645104-33645189)
[»] scaffold0428 (3 HSPs)
scaffold0428 (82-301)||(5615-5834)
scaffold0428 (57-157)||(12009-12109)
scaffold0428 (216-294)||(13083-13161)
[»] chr2 (2 HSPs)
chr2 (66-301)||(17441453-17441676)
chr2 (233-301)||(17446980-17447048)
[»] scaffold1408 (1 HSPs)
scaffold1408 (214-301)||(1-88)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 33261780 - 33262061
Alignment:
Q  20 acaatatcatacaacagagatttataaagtgatgaataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacag 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  33261780 acaaaatcatacaacagagatttataaagtgatgaataatataaaattaacaagattcttttgaattatcttcagtacctctgcttgcggttgaaaacag 33261879  T
Q  120 agattgtttttgcgtttgacttgttatcacttgttgactttattctctgtgaagtagttatgacttgtgaggtgaatgattcttgctctgattgtggttg 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33261880 agattgtttttgcgtttgacttgttatcacttgttgacttttttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttg 33261979  T
Q  220 tggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33261980 tggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 33262061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 33283836 - 33283973
Alignment:
Q  20 acaatatcatacaacagagatttataaagtgatgaataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacag 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33283836 acaaaatcatacaacagagatttataaagtgatgaataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacag 33283935  T
Q  120 agattgtttttgcgtttgacttgttatcacttgttgac 157  Q
    |||||||||||||| ||||||||||| ||||| |||||    
T  33283936 agattgtttttgcggttgacttgttagcacttcttgac 33283973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 51 - 300
Target Start/End: Original strand, 33387351 - 33387615
Alignment:
Q  51 atgaataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcgtttgacttgttatcact 150  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  33387351 atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact 33387450  T
Q  151 tgttga---------------------ctttattctctgtgaagtagttatgacttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtc 229  Q
    ||||||                      ||| ||||| ||| | ||||||||||||||||  |||||||||||||      |||||||||| ||||||||    
T  33387451 tgttgaattttttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttg------ttgtggttgtagttgtgtc 33387544  T
Q  230 tcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaa 300  Q
     ||||||||||||||||||||||||| |||| ||||||||| ||||| ||||| ||||||| |||||||||    
T  33387545 ccatcttcaattgccaaaatcttacacttcggagccaaggaattttcgtgatttatcattggtaagttgaa 33387615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 33282143 - 33282243
Alignment:
Q  57 aatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcgtttgacttgttatcacttgttga 156  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  33282143 aatataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga 33282242  T
Q  157 c 157  Q
    |    
T  33282243 c 33282243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 33409303 - 33409428
Alignment:
Q  170 gaagtagttatgacttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaagg 269  Q
    ||||||||||||||||||||| ||||||||||||| ||||      ||||||||||||||||  |||||||||||| ||||||||| |||  ||||||||    
T  33409303 gaagtagttatgacttgtgagatgaatgattcttgttctg------gttgtggttgtgtctcgccttcaattgccataatcttacacttctgagccaagg 33409396  T
Q  270 atttttcatgattcatcattgttaagttgaac 301  Q
    | |||||||||||||||||||| |||||||||    
T  33409397 aattttcatgattcatcattgtgaagttgaac 33409428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 33397941 - 33398044
Alignment:
Q  54 aataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcgtttgacttgttatcacttgt 153  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||| |  ||||||||||||||||    
T  33397941 aataatataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttgcggtcaacttgttatcacttgt 33398040  T
Q  154 tgac 157  Q
    ||||    
T  33398041 tgac 33398044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 33408851 - 33408954
Alignment:
Q  54 aataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcgtttgacttgttatcacttgt 153  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||| || | |||||||||||||||||    
T  33408851 aataatataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttccggtcgacttgttatcacttgt 33408950  T
Q  154 tgac 157  Q
    ||||    
T  33408951 tgac 33408954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 33303803 - 33303939
Alignment:
Q  162 ttctctgtgaagtagttatgacttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcga 261  Q
    |||||||||||||  ||||||||  |||| ||||||||||||| |||  ||  |||| |||||||||||||||||||||||||||| |||| || |||      
T  33303803 ttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttccc 33303900  T
Q  262 agccaaggatttttcatgattcatcattgttaagttgaa 300  Q
    ||||||| | ||||| |||||||||||||||||||||||    
T  33303901 agccaagaaattttcttgattcatcattgttaagttgaa 33303939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 152 - 301
Target Start/End: Original strand, 33358220 - 33358375
Alignment:
Q  152 gttgactttattctctgtgaagtagttatgacttgtgaggtgaatgattcttgctct------gattgtggttgtggttgtgtctcatcttcaattgcca 245  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||      | ||| ||||| ||||| |||| ||||||||||||||    
T  33358220 gttgactttcttctctgtgaagtaattatgacttgtgagatgaatgattcttgttctagttgcggttgcggttgcggttgcgtctaatcttcaattgcca 33358319  T
Q  246 aaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||||| ||||||  ||  |||   ||||| |||||||||||||| |||||||||    
T  33358320 aaatcttgcatttcccagttaagagattttcgtgattcatcattgtgaagttgaac 33358375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 33398391 - 33398512
Alignment:
Q  170 gaagtagttatgacttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaagg 269  Q
    ||||||||||||||||||||| ||||||||||||| ||||      ||||||||||||||||  |||||||||||| ||||||||| ||   ||| ||||    
T  33398391 gaagtagttatgacttgtgagatgaatgattcttgttctg------gttgtggttgtgtctcgccttcaattgccataatcttacacttttgagcaaagg 33398484  T
Q  270 atttttcatgattcatcattgttaagtt 297  Q
    | |||||||||||||||||||| |||||    
T  33398485 aattttcatgattcatcattgtgaagtt 33398512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 31563498 - 31563386
Alignment:
Q  162 ttctctgtgaagtagttatgacttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcga 261  Q
    |||| |||||| |||||||||||| |||| |||| |||| ||| |||| |||  |||||||||||||||||||||||||||||||| |||| || |||      
T  31563498 ttctttgtgaattagttatgacttatgagatgaaagattattgttctgcttgcagttgtggttgtgtctcatcttcaattgccaaattctttcacttccg 31563399  T
Q  262 agccaaggatttt 274  Q
    |||||||||||||    
T  31563398 agccaaggatttt 31563386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 33396806 - 33396874
Alignment:
Q  233 tcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||||||| |||||||||| || |||  | ||||||| ||||||||||||||||||||||||||||||    
T  33396806 tcttcaatttccaaaatcttgcacttctgaaccaaggaattttcatgattcatcattgttaagttgaac 33396874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 33407756 - 33407824
Alignment:
Q  233 tcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||||||| |||||||||| || |||  ||||||||| ||||| ||||||||||||||||||||||||    
T  33407756 tcttcaatttccaaaatcttgcacttctgagccaaggaattttcgtgattcatcattgttaagttgaac 33407824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 33284987 - 33285053
Alignment:
Q  235 ttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||||||||| ||||||||| |||| |||||||||| |||  ||||||||||||||||| ||||||    
T  33284987 ttcaattgccataatcttacacttcggagccaaggatattttgtgattcatcattgttaaattgaac 33285053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 33271219 - 33271276
Alignment:
Q  236 tcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgtta 293  Q
    ||||||||||||||||||||||| | ||||||||| ||||| ||||||| ||||||||    
T  33271219 tcaattgccaaaatcttacattttggagccaaggaattttcgtgattcagcattgtta 33271276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 28870812 - 28870727
Alignment:
Q  215 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||| ||||||||| ||||||||||| ||||||||||  | |||  ||||||||| ||||  || |||||||||||||||||||||    
T  28870812 ggttgcggttgtgtcccatcttcaatttccaaaatcttgaacttctgagccaaggaatttttgtg-ttcatcattgttaagttgaac 28870727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 33281091 - 33281169
Alignment:
Q  216 gttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaa 294  Q
    |||| ||||||||| ||||||||||| |||||||||| || |||  |||||||||   |||||||||||| ||||||||    
T  33281091 gttgcggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaa 33281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 301
Target Start/End: Original strand, 9166082 - 9166205
Alignment:
Q  174 tagttatgacttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggattt 273  Q
    |||| ||||||| ||||  |||||||||||| |||| ||  |||||||| ||| ||||||| | |||||||||| |||| ||  ||  |||||| |||||    
T  9166082 tagtcatgacttatgagacgaatgattcttgttctggtt-cggttgtggctgtctctcatcctaaattgccaaagtcttgcacgtccgagccaatgattt 9166180  T
Q  274 ttcatgattcatcattgttaagttgaac 301  Q
    ||| |||||||||   ||||||||||||    
T  9166181 ttcgtgattcatc---gttaagttgaac 9166205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 33358149 - 33358182
Alignment:
Q  54 aataatataaaattaacaagattcttttgaatta 87  Q
    ||||||||||| ||||||||||||||||||||||    
T  33358149 aataatataaagttaacaagattcttttgaatta 33358182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 33645189 - 33645104
Alignment:
Q  215 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggat-ttttcatgattcatcattgttaagttgaac 301  Q
    |||||||||| || ||||||||||  | || ||| |||||| |||| ||| |||||| ||||  ||||||||||||||||||||||||    
T  33645189 ggttgtggttctgcctcatcttca--tacccaaaccttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaac 33645104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 82 - 301
Target Start/End: Original strand, 5615 - 5834
Alignment:
Q  82 gaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcgtttgacttgttatcacttgttgactttattctctgtgaagtagttatg 181  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5615 gaattatcttcagtacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatcacttgttgactttcttctctgtgaagtagttatg 5714  T
Q  182 acttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgat 281  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715 acttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgat 5814  T
Q  282 tcatcattgttaagttgaac 301  Q
    ||||||||||||||||||||    
T  5815 tcatcattgttaagttgaac 5834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 12109 - 12009
Alignment:
Q  57 aatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcgtttgacttgttatcacttgttga 156  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  12109 aatataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga 12010  T
Q  157 c 157  Q
    |    
T  12009 c 12009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 13161 - 13083
Alignment:
Q  216 gttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaa 294  Q
    |||| ||||||||| ||||||||||| |||||||||| || |||  |||||||||   |||||||||||| ||||||||    
T  13161 gttgcggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaa 13083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 301
Target Start/End: Complemental strand, 17441676 - 17441453
Alignment:
Q  66 ttaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcgtttgacttgttatcacttgttgactttattct 165  Q
    ||||||||||| ||||||||||||||| |||||  ||||||  ||||||||||||||||||| ||||  |||| ||||||||||||||||||||| ||||    
T  17441676 ttaacaagatttttttgaattatcttccgtacctttgcttgttgttgacaacagagattgttgttgcagttgatttgttatcacttgttgactttcttct 17441577  T
Q  166 ctgtgaagtagttatgacttgtgaggtgaatgattcttgctctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagcc 265  Q
     |||||||||||||||||||||||| ||||||||||||            ||| ||||||||||||||||||||||||||||||||| || |||  ||||    
T  17441576 ttgtgaagtagttatgacttgtgagatgaatgattctt------------gttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagcc 17441489  T
Q  266 aaggatttttcatgattcatcattgttaagttgaac 301  Q
    |||| |||||| ||||||||||||||||||||||||    
T  17441488 aaggttttttcgtgattcatcattgttaagttgaac 17441453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 17447048 - 17446980
Alignment:
Q  233 tcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||||||| | |||||||| || |||  ||||||||| ||||| | ||||| ||||||||||||||||    
T  17447048 tcttcaatttcaaaaatcttgcacttctgagccaaggaattttcgttattcaacattgttaagttgaac 17446980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 1 - 88
Alignment:
Q  214 tggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 tggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaac 88  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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