View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21324_high_16 (Length: 242)

Name: NF21324_high_16
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21324_high_16
NF21324_high_16
[»] chr6 (16 HSPs)
chr6 (19-242)||(33262350-33262573)
chr6 (23-235)||(33387885-33388097)
chr6 (19-235)||(33304215-33304431)
chr6 (19-236)||(28870230-28870447)
chr6 (19-235)||(33644601-33644817)
chr6 (24-235)||(31562890-31563101)
chr6 (19-235)||(33285325-33285544)
chr6 (104-235)||(9166492-9166623)
chr6 (99-235)||(33057309-33057445)
chr6 (105-210)||(33398828-33398933)
chr6 (104-236)||(33409708-33409840)
chr6 (89-179)||(33271582-33271672)
chr6 (19-64)||(33398956-33399001)
chr6 (185-235)||(33358664-33358714)
chr6 (19-65)||(33358797-33358843)
chr6 (19-63)||(33271689-33271733)
[»] scaffold1408 (1 HSPs)
scaffold1408 (23-235)||(375-587)
[»] scaffold0428 (1 HSPs)
scaffold0428 (23-235)||(6121-6333)
[»] chr4 (7 HSPs)
chr4 (104-242)||(31472696-31472834)
chr4 (104-235)||(31499201-31499332)
chr4 (19-242)||(31479069-31479292)
chr4 (104-157)||(31148106-31148159)
chr4 (107-171)||(31157018-31157082)
chr4 (109-170)||(31017356-31017417)
chr4 (107-152)||(31484918-31484963)
[»] chr2 (1 HSPs)
chr2 (104-235)||(17441014-17441139)
[»] chr7 (1 HSPs)
chr7 (107-141)||(6785524-6785558)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 33262573 - 33262350
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtc 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33262573 gaacgttgcagtagcatgacattttcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtc 33262474  T
Q  119 caggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcat 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33262473 caggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcat 33262374  T
Q  219 tggctttctatgttgtgttgtatt 242  Q
    ||||||||||||||||||||||||    
T  33262373 tggctttctatgttgtgttgtatt 33262350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 33388097 - 33387885
Alignment:
Q  23 gttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtccagg 122  Q
    ||||||||||||||||||| ||||||| ||||||||| ||| | ||| ||| |||| |||||||| | ||||| |||  | |||||||||||| | ||||    
T  33388097 gttgcagtagcatgacattttcatggatgacacaatttattaaggcaaaccgacaaacctaccctgcctattttgatacgattcaaattgttactacagg 33387998  T
Q  123 aagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcattggc 222  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||   |||||||||||||| |||||||||||||||||||||    
T  33387997 aagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggc 33387898  T
Q  223 tttctatgttgtg 235  Q
    |||||||||||||    
T  33387897 tttctatgttgtg 33387885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 33304431 - 33304215
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtc 118  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||| | ||| ||  ||||||||||||||| |  || |||  | |||||||||||| ||    
T  33304431 gaacgttgcagtagcatgacattttcatggttgacacaattcattgaggcaaactcacaatcctaccctacgtcctttgattggattcaaattgttactc 33304332  T
Q  119 caggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcat 218  Q
    |||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| | |||||| | |||||||||||||||| ||||||||| |||||||    
T  33304331 caggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgacaataacaattatatcat 33304232  T
Q  219 tggctttctatgttgtg 235  Q
    |||||||||||||||||    
T  33304231 tggctttctatgttgtg 33304215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 28870230 - 28870447
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtc 118  Q
    ||||||||  |||||||| |||| ||||||| || |||||||||||  ||||||| ||||||||||| |   |||||||||| |||| | ||||||| ||    
T  28870230 gaacgttgttgtagcatggcattttcatggatgaaacaattcattcgggcataccgacaatcctaccttgtctatttggatgcgtttaatattgttactc 28870329  T
Q  119 caggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcat 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||| || ||||||||||  |||| |||||||||||||||||    
T  28870330 caggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataacaataatatcat 28870429  T
Q  219 tggctttctatgttgtgt 236  Q
    ||||||| ||||||||||    
T  28870430 tggctttgtatgttgtgt 28870447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 33644601 - 33644817
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtc 118  Q
    ||||||||||| ||||||||||| ||||||| || |||||||||||| ||| ||| |||||||||||| || || || |||  |  ||||||||| | ||    
T  33644601 gaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactc 33644700  T
Q  119 caggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcat 218  Q
    |||||||||||||||||||||||||||||||||| ||  ||||| ||||||||| | ||||| || |||||||||||||||| |||||||||||||||||    
T  33644701 caggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcat 33644800  T
Q  219 tggctttctatgttgtg 235  Q
    ||| ||| |||||||||    
T  33644801 tggatttgtatgttgtg 33644817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 31562890 - 31563101
Alignment:
Q  24 ttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtccagga 123  Q
    |||||| ||||||||||| ||||||| | ||||||||||| | ||||| | ||| ||||||||| | ||||||||||||||||| ||||||  |||||||    
T  31562890 ttgcaggagcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccagga 31562989  T
Q  124 agtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcattggct 223  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||     |||||  ||||||||| |||| |||| ||||||||||||    
T  31562990 agtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatcattggct 31563089  T
Q  224 ttctatgttgtg 235  Q
    || |||||||||    
T  31563090 ttgtatgttgtg 31563101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 33285544 - 33285325
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctac----ttatttggatgagtttcaaattgtt 114  Q
    |||||||||||||||||| |||| ||||||| || ||||||||| || ||||||||||| |  |||||| |    ||||||| | | | |||| ||||||    
T  33285544 gaacgttgcagtagcatggcattttcatggatgatacaattcatccaggcataccaacacttttaccctgcgtccttatttgaagg-gattcatattgtt 33285446  T
Q  115 agtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataata 214  Q
    | ||||||||||||||||||||||||||| || ||||||||| |||||  |||||||||| |||||  | |||||||||||||||| |||||||||||||    
T  33285445 actccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaataacaataata 33285346  T
Q  215 tcattggctttctatgttgtg 235  Q
    ||||||||||| |||||||||    
T  33285345 tcattggctttgtatgttgtg 33285325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 9166623 - 9166492
Alignment:
Q  104 ttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataa 203  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||| |||| ||| || ||| |||||| |||||| |||||||||||||||||| ||    
T  9166623 ttcaaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgacaa 9166524  T
Q  204 taacaataatatcattggctttctatgttgtg 235  Q
    |||||||||||||||||||||| |||||||||    
T  9166523 taacaataatatcattggctttgtatgttgtg 9166492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 33057445 - 33057309
Alignment:
Q  99 tgagtttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcat 198  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||| | ||||||||| ||||    
T  33057445 tgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcat 33057346  T
Q  199 gataataacaataatatcattggctttctatgttgtg 235  Q
    || ||| ||||||||||||||||  || |||||||||    
T  33057345 gacaatgacaataatatcattggtattgtatgttgtg 33057309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 33398933 - 33398828
Alignment:
Q  105 tcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataat 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| | |||||| | |||||  |||||||||||||    
T  33398933 tcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataat 33398834  T
Q  205 aacaat 210  Q
    ||||||    
T  33398833 aacaat 33398828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 33409840 - 33409708
Alignment:
Q  104 ttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataa 203  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || | ||  || ||||| ||||  |||| ||    
T  33409840 ttcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaa 33409741  T
Q  204 taacaataatatcattggctttctatgttgtgt 236  Q
    |||||||||||| ||||||||| || |||||||    
T  33409740 taacaataatattattggctttgtaagttgtgt 33409708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 33271672 - 33271582
Alignment:
Q  89 cttatttggatgagtttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtaga 179  Q
    |||||||| |||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  33271672 cttatttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaataga 33271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 33399001 - 33398956
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattc 64  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||    
T  33399001 gaacgttgcagtagcatgacattttcatggatgatacaattcattc 33398956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 33358714 - 33358664
Alignment:
Q  185 ctcctattatgcatgataataacaataatatcattggctttctatgttgtg 235  Q
    ||||||||| |||||| |||||||||||| ||||||| ||| |||||||||    
T  33358714 ctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtg 33358664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 33358843 - 33358797
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattca 65  Q
    ||||||||||||||||||||| | ||||||| || ||||||||||||    
T  33358843 gaacgttgcagtagcatgacactttcatggatgaaacaattcattca 33358797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 33271733 - 33271689
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcatt 63  Q
    ||||||||||||||| ||||||| ||||||| || ||||||||||    
T  33271733 gaacgttgcagtagcttgacattttcatggatgatacaattcatt 33271689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 587 - 375
Alignment:
Q  23 gttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtccagg 122  Q
    |||| |||||||| ||||| ||||||| || |||||||||||| ||| ||||||||||||||  | | |||||| ||||| |||||||||||| ||||||    
T  587 gttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccagg 488  T
Q  123 aagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcattggc 222  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||| || ||||| |||| ||||| ||||| |||||||||||||||    
T  487 aagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggc 388  T
Q  223 tttctatgttgtg 235  Q
    ||| ||| |||||    
T  387 tttgtattttgtg 375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 6333 - 6121
Alignment:
Q  23 gttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtccagg 122  Q
    |||| |||||||| ||||| ||||||| || |||||||||||| ||| ||||||||||||||  | | |||||| ||||| |||||||||||| ||||||    
T  6333 gttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccagg 6234  T
Q  123 aagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcattggc 222  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||| || ||||| |||| ||||| ||||| |||||||||||||||    
T  6233 aagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggc 6134  T
Q  223 tttctatgttgtg 235  Q
    ||| ||| |||||    
T  6133 tttgtattttgtg 6121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 242
Target Start/End: Original strand, 31472696 - 31472834
Alignment:
Q  104 ttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataa 203  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||| |||| | |||||  | |||| ||||||||||| ||    
T  31472696 ttcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgacaa 31472795  T
Q  204 taacaataatatcattggctttctatgttgtgttgtatt 242  Q
    |||||||||||||||||| | | |||||||||| |||||    
T  31472796 taacaataatatcattggttgtatatgttgtgtagtatt 31472834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 31499201 - 31499332
Alignment:
Q  104 ttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataa 203  Q
    |||| ||||||| |||||||||||||||| |||||||| | || |||||||||| |||||||||||||| | |||||  | |||| ||||| ||||| ||    
T  31499201 ttcatattgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaa 31499300  T
Q  204 taacaataatatcattggctttctatgttgtg 235  Q
    |||||||||||||||||||||| |||||||||    
T  31499301 taacaataatatcattggctttgtatgttgtg 31499332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 31479069 - 31479292
Alignment:
Q  19 gaacgttgcagtagcatgacattgtcatggacgacacaattcattcaagcataccaacaatcctaccct-acttatttggatgagtttcaaattgttagt 117  Q
    |||||||| |||||||||||||| ||||||| || |||||||||||| ||| ||| ||||| || || | |||  | || ||  | |||||||||||| |    
T  31479069 gaacgttggagtagcatgacattttcatggatgatacaattcattcaggcaaaccgacaattctcccatgactcctctg-atagggttcaaattgttact 31479167  T
Q  118 ccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatca 217  Q
    ||||| |||||||| ||||||||| ||||||||||||||| |||| ||| ||||| | ||||     |||| |||||||| || |||||||||||||||     
T  31479168 ccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaataacaataatatcg 31479267  T
Q  218 ttggctttctatgttgtgttgtatt 242  Q
    |||||| | |||||||||| |||||    
T  31479268 ttggctgtgtatgttgtgtagtatt 31479292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 31148159 - 31148106
Alignment:
Q  104 ttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagca 157  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  31148159 ttcaaattgttactccgggaagtgaaataccaagttggttcaacaatcagagca 31148106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 31157082 - 31157018
Alignment:
Q  107 aaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaata 171  Q
    ||||||||| ||| |||||||||||||||| |||| ||||||||||||||  |||||||||||||    
T  31157082 aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaata 31157018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 31017417 - 31017356
Alignment:
Q  109 attgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaat 170  Q
    ||||||| ||| ||||||||||||||||| ||| | |||||||||||| | ||| |||||||    
T  31017417 attgttattcctggaagtgaaataccaaggtggttgaacaatcagagcctaggtaattcaat 31017356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 31484918 - 31484963
Alignment:
Q  107 aaattgttagtccaggaagtgaaataccaagttggatcaacaatca 152  Q
    ||||||||| |||||| |||||||||||||| ||| ||||||||||    
T  31484918 aaattgttattccaggcagtgaaataccaagctggttcaacaatca 31484963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 17441014 - 17441139
Alignment:
Q  104 ttcaaattgttagtccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataa 203  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||  | |||||||| ||||||||| |||||        
T  17441014 ttcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagcatg---- 17441109  T
Q  204 taacaataatatcattggctttctatgttgtg 235  Q
      |||||||||||||||| ||| |||||||||    
T  17441110 --acaataatatcattggttttgtatgttgtg 17441139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 6785524 - 6785558
Alignment:
Q  107 aaattgttagtccaggaagtgaaataccaagttgg 141  Q
    ||||||||| |||||||||||||||||||||||||    
T  6785524 aaattgttattccaggaagtgaaataccaagttgg 6785558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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