View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21324_high_5 (Length: 419)
Name: NF21324_high_5
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 18586119 - 18586251
Alignment:
| Q |
111 |
gagcagagaatgttcataattctttgattggaaaatcaagtgtttctaaaaatacaattgttgatcaaaaaattgctgctaatgattctagtgactatct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18586119 |
gagcagagaatgttcataattctttgattggaaaatcaagtgtttctaaaaatacaattgttgatcaaaaaattgctgctaatgattctagtgactatct |
18586218 |
T |
|
| Q |
211 |
ttggtacatgacaaggtaattaataaaacccta |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18586219 |
ttggtacatgacaaggtaattaataaaacccta |
18586251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 18586320 - 18586427
Alignment:
| Q |
312 |
ctaatgatagacttgatattaatcaaaaggatccagttttgacaaataatacaattctaaggattaatggcactggacatgtaattcatgcatctgtcaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18586320 |
ctaatgatagacttgatattaatcaaaaggatccagtttggacaaataatacaattctaaggattaatggcactggacatgtaattcatgcatttgtcaa |
18586419 |
T |
|
| Q |
412 |
tggagaac |
419 |
Q |
| |
|
|||||||| |
|
|
| T |
18586420 |
tggagaac |
18586427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 18586622 - 18586534
Alignment:
| Q |
19 |
actaagaagactgatatcattcctgccatgcttcaacttaatgttagtctcaaattgatcattgtgaatgccatatgtagcccaatgag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18586622 |
actaagaagactgatatcattcctgccatgcttcaacttaatgttagtctcaaattgatcattgtgaatgccatatgtagcccaatgag |
18586534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University