View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21324_high_6 (Length: 403)
Name: NF21324_high_6
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 39562013 - 39562384
Alignment:
| Q |
19 |
accatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttgttagtctgat |
118 |
Q |
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| T |
39562013 |
accatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttgttagtctgat |
39562112 |
T |
|
| Q |
119 |
atggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaatt |
218 |
Q |
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| T |
39562113 |
atggtattggtttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaagtt |
39562212 |
T |
|
| Q |
219 |
cttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgtacattaac |
318 |
Q |
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| T |
39562213 |
cttgaatgctggcctcaattggcagccatcaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgtacattaat |
39562312 |
T |
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| Q |
319 |
tattattagaaaacattgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgct |
390 |
Q |
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| T |
39562313 |
tattattagaaaacattgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgct |
39562384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 389
Target Start/End: Original strand, 39566695 - 39567060
Alignment:
| Q |
22 |
atgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttgttagtctgatatg |
121 |
Q |
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| T |
39566695 |
atgcacatgagattgtgtagaagattatatcttattaaagaaaacctttagaatctcgaaaggctagattttccaatttggctcttgttattctgatatg |
39566794 |
T |
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| Q |
122 |
gtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaattctt |
221 |
Q |
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| T |
39566795 |
gtattgggttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaattctt |
39566894 |
T |
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| Q |
222 |
gaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcac-tagttgtgataatgtacattaacta |
320 |
Q |
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| T |
39566895 |
gaatgctggtatcaattgacagccatcaataaagctagaa-cctcagttggcatttttatctgattaaactcacttagttgtaataatgtacatt-atta |
39566992 |
T |
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| Q |
321 |
ttattagaaaacat-tgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgc |
389 |
Q |
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| T |
39566993 |
t--tttgaaaacatgtacggaattttcctaccactcattaagcttacaaatatatagtctgtgtctctgc |
39567060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 350
Target Start/End: Original strand, 39572198 - 39572532
Alignment:
| Q |
21 |
catgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttaga-------atctcgaaaggctggattttccaatttggctcttgttagt |
113 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||| || |||||||| |
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| T |
39572198 |
catgcacatgagattgtgttgaatattatatcttattgtagaaaacctttagagtttagaatcttgaaaggctagattttccaattttcctattgttagt |
39572297 |
T |
|
| Q |
114 |
ctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgtactgacta |
213 |
Q |
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| T |
39572298 |
ctgatttggtattgggttatgaatccacagtatcttaatgcaatccataactgggacaccaaaagtaatattagaataaccaaggtttttgtactaacta |
39572397 |
T |
|
| Q |
214 |
aaattcttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgtaca |
313 |
Q |
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| T |
39572398 |
aaacccttgaatgctggcttccact-aca-ccatcaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgtaca |
39572495 |
T |
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| Q |
314 |
ttaactattattagaaaacattgcaaaattttcctac |
350 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
39572496 |
ttaattattattagaaaacattgcaaaattttcctac |
39572532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 39581073 - 39580986
Alignment:
| Q |
23 |
tgcacgtgagattgtgttgaagattatat--cttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttg |
108 |
Q |
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| T |
39581073 |
tgcacatgagattgtgttgaagatcatataccttattaaagaaaaagtttagaatctcgaaaggctagattttacaattttgctcttg |
39580986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 39584694 - 39584617
Alignment:
| Q |
31 |
agattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttg |
108 |
Q |
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| T |
39584694 |
agattgtgttcaagattatattttactaaagaaaaccttgtaaatctcgaaaggctagattttctaatttggctcttg |
39584617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 39560705 - 39560749
Alignment:
| Q |
21 |
catgcacgtgagattgtgttgaagattatatcttattaaagaaaa |
65 |
Q |
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||||||| | ||||| ||||||||||||||| ||||||||||||| |
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| T |
39560705 |
catgcacatcagattatgttgaagattatatattattaaagaaaa |
39560749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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