View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21324_low_12 (Length: 315)
Name: NF21324_low_12
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 47983706 - 47983991
Alignment:
| Q |
14 |
atatcacagtctcctaatgt--catatcaatatctttggtgcctattacttcattactgaattctgtcccaggaaatggatttgtaagtcatgcggtgaa |
111 |
Q |
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| T |
47983706 |
atatcacagtcttctaatgtgtcatatcaatatctttggtgcctattacttcattactgaattctgtcccaggaaatggatttgtaagtcatttggtgaa |
47983805 |
T |
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| Q |
112 |
tttgtatcttagatgtgagtagtagacacctgcgactttggttttcctctgcccaatactttttcttcttctggatttttattttctgttggaatatatg |
211 |
Q |
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| T |
47983806 |
tttgtatcttagatgtgagtagtagacacctgcgactttggttttcctctgcccaatactttttcttcttctggatttttattctctgttggaatatatg |
47983905 |
T |
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| Q |
212 |
ttggtacatctgtttaaaaattctgtttcaaacagataaacctgcaatagaggaacttcatcaatttctagagtttcagttgccac |
297 |
Q |
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| T |
47983906 |
ttggtacatctgtttaaaaattctgtttcaaacagataaacctgcaatagaggaacttcatcaatttctagagtttcagttgccac |
47983991 |
T |
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Back To:
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Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 35116429 - 35116148
Alignment:
| Q |
14 |
atatcacagtctcctaatgtcatatcaatatctttggtgcctattacttcattactgaattctgtcccaggaaatggatttgtaagtcatgcggtgaatt |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35116429 |
atatcacagtctcctaatgtcatatcaatgtctttggtgcctattacttcattactgaattctgtcccaggaaatggatttttaagtcatgcggtgaatt |
35116330 |
T |
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| Q |
114 |
tgtatcttagatgtgagtagtagacacctgcgactttggttttcctctgcccaatactttttct-tcttctggatttttattttctgttggaatatatgt |
212 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||| | ||||||||||||||| |
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| T |
35116329 |
tgtatcttagatgtg---agtaaacacctgcgactttggttttcctctgcccaatactttttttctcttatggatttctattctttgttggaatatatgt |
35116233 |
T |
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| Q |
213 |
tggtacatctgtttaaaaattctgtttcaaacagataaacctgcaatagaggaacttcatcaatttctagagtttcagttgccac |
297 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35116232 |
tggtacatctgtttaataattctgtttcaaacagataaacctgcaatagaagaacttcatcaatttctagagtttcagttgccac |
35116148 |
T |
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