View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21324_low_16 (Length: 296)
Name: NF21324_low_16
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 26608361 - 26608087
Alignment:
| Q |
6 |
caaagaacataacaaaacaacacacacacaaagagaaaggtaagaggcagaatgagtcattatctaaattgttgccagcgttagggacgaggagacagct |
105 |
Q |
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| T |
26608361 |
caaagaacatagcaaaacaacacacacacaaagagaaaggtaagaggcagaatgagtcattatctaaattgttgccagcgttagggacgaggagacagct |
26608262 |
T |
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| Q |
106 |
ataaggaccttatggnnnnnnnnnaatgttaataaaaaaccctacaaaataagagagtccgtgaactggcatagtcctctccacgtggggtcctgaaaaa |
205 |
Q |
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| T |
26608261 |
ataagaaccttatggtttttttt-aatgttaataaaaaaccctacaaaataagagagtccgtgaactggcatagtcctctccacgtggggtcctgaaaaa |
26608163 |
T |
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| Q |
206 |
ctatgagctggatttccatctacttgcttttatactcttattactatagaaga-ttttatttttcaaacaaatata |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26608162 |
ctatgagctggatttccatctacttgcttttatactcttattactatagaagatttttatttttcaaacaaatata |
26608087 |
T |
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