View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21324_low_2 (Length: 500)
Name: NF21324_low_2
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_low_2 |
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| [»] scaffold0227 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 4 - 495
Target Start/End: Complemental strand, 35390122 - 35389633
Alignment:
| Q |
4 |
acccactccaatcttccacccaaatctttcaatttaagctaaaaggaacgagatgtaagttgtgtttttcccttttctctccgaatttcaaacttttcac |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35390122 |
acccactccaatcttccacccaaatctttcaatttaagctaaaaggaacgagatgtaagttgtgtttttcccttttctctccgaatttcacacttttcac |
35390023 |
T |
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| Q |
104 |
cgtaaatctcatttctcaatttttgtttgagtttaagctcttccatgtggatatcttggaatggaaccacaatgtagtaaataaatactttgatttttgg |
203 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35390022 |
cgtaaatctcatttctcaatttttgtt-gagtttaagctcttccatgtggatatcttggaatggaaccacaatgtagtaaataaatactttgatttt-gg |
35389925 |
T |
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| Q |
204 |
agtctaacaatattcccatttacaattatttgtatgctaaaccttattaccttcaacttgtaattatgttttcatgaaccagtaatgaatatcaaaatga |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35389924 |
agtctaacaatattcccatttacaattatttgtatgctaaaccttattaccttcaacttgtaattatgttttcatgaaccagtaacgaatatcaaaatga |
35389825 |
T |
|
| Q |
304 |
cctactcaattttgtttcagtaattgtctcctctgtgcttctgtattgtcgcatttttgcagagggattgccagaaagcaaccatggatggtatgtgatc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35389824 |
cctactcaattttgtttcagtaattgtctcctctgtgcttctgtattgtcgcatttttgcagagggattgccagaaagcaaccatggatggtatgtgatc |
35389725 |
T |
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| Q |
404 |
tcattattacttcatttttgtgtttgttgttctgattcnnnnnnncaaatcaaaatgggaattttatttatatgtgtgggtttcatctcagt |
495 |
Q |
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| T |
35389724 |
tcattattacttcatttttgtgtttgttgttctgattctttttttcaaatcaaaatgggaattttatttatatgtgtgggtttcatttcagt |
35389633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 28084393 - 28084441
Alignment:
| Q |
298 |
aaatgacctactcaattttgtttcagtaattgtctcctctgtgcttctg |
346 |
Q |
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| T |
28084393 |
aaatgacctactaaattttgtttcagtaattgcctcccctgtgcttctg |
28084441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 15317 - 15212
Alignment:
| Q |
26 |
aatctttcaatttaagctaaaaggaacgagatgtaagttgtgtttttccc-ttttctctccgaatttcaaacttttcaccgtaaatctcatttctcaatt |
124 |
Q |
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||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||| ||||||| |||||||||| ||||||||||||||||| |
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| T |
15317 |
aatctttcaatttaagctaaaaggaacaacatgtaagttgtatttttccctttttctctccaaatttcacacttttcacccaaaatctcatttctcaatg |
15218 |
T |
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| Q |
125 |
tttgtt |
130 |
Q |
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| T |
15217 |
tttgtt |
15212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 14992 - 14877
Alignment:
| Q |
271 |
gttttcatgaaccagtaatgaatatcaaaatgacctactcaattttgtttcagtaattgtctcctctgtgcttctgtattgtcgcatttttgcagaggga |
370 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||| |||| | ||| |
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| T |
14992 |
gttttcatgaaccagtaacaaatatcgaaatgacctactcaattttgtttcagtgattgtctcccc-------------tgtcgcatttgtgcataagga |
14906 |
T |
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| Q |
371 |
ttgccagaaagcaaccatggatggtatgt |
399 |
Q |
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| T |
14905 |
ttgccagaaagcaaccatggatggtatgt |
14877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 495
Target Start/End: Complemental strand, 14841 - 14806
Alignment:
| Q |
460 |
gggaattttatttatatgtgtgggtttcatctcagt |
495 |
Q |
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| T |
14841 |
gggaattttatttatatgtgtgggtttcatttcagt |
14806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 15188 - 15121
Alignment:
| Q |
160 |
tggaatggaaccacaatgtagtaaataaatactttgatttttggagtctaacaatattcccatttacaattat |
232 |
Q |
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||||||||||||||||||||||||||| |||||| ||||| ||| || ||||||||||||||||||||| |
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| T |
15188 |
tggaatggaaccacaatgtagtaaata----ctttgaattttg-agtttattaatattcccatttacaattat |
15121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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