View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21324_low_20 (Length: 239)
Name: NF21324_low_20
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_low_20 |
 | |
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| [»] scaffold1778 (1 HSPs) |
| | |
|
| [»] scaffold0146 (1 HSPs) |
| | |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 22299450 - 22299313
Alignment:
| Q |
18 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
22299450 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaacc |
22299351 |
T |
|
| Q |
118 |
aaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22299350 |
aatttagaagaaggtactaatgtaatagtaggccaaaa |
22299313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 24807209 - 24807346
Alignment:
| Q |
18 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaacc |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
24807209 |
aaaagtttcttcgttctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaacc |
24807308 |
T |
|
| Q |
118 |
aaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24807309 |
aatttagaagaaggtactaatgtaatagtaggccaaaa |
24807346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 23732576 - 23732701
Alignment:
| Q |
23 |
tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaaccaaatt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||| || |
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|
| T |
23732576 |
tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacacttgaaaacactaa-caactt |
23732674 |
T |
|
| Q |
123 |
agaagaaggtactaatgtaatagtagg |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23732675 |
agaagaaggtactaatgtaatagtagg |
23732701 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 29950984 - 29950847
Alignment:
| Q |
18 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
29950984 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttaaaaacacaaacc |
29950885 |
T |
|
| Q |
118 |
aaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29950884 |
aacttagaagaaggtactaatgtaatagtaggccaaaa |
29950847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 15018564 - 15018701
Alignment:
| Q |
18 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
15018564 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttaaaaacacaaacc |
15018663 |
T |
|
| Q |
118 |
aaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
15018664 |
aacttagaagaaggtactagtgtaatagtaggccaaaa |
15018701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 19457356 - 19457224
Alignment:
| Q |
23 |
tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaaccaaatt |
122 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
19457356 |
tttcttcattctctttgtttccttcgtgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaactt |
19457257 |
T |
|
| Q |
123 |
agaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
| |||||||||||||| |||||||||| ||||| |
|
|
| T |
19457256 |
ataagaaggtactaatttaatagtaggtcaaaa |
19457224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 19459068 - 19458937
Alignment:
| Q |
23 |
tttcttcattctcttt-gtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaaccaaat |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||| | ||||| |||||||||||||||||||||||||||| | |
|
|
| T |
19459068 |
tttcttcattctcttttgtttccttcattacataaagaaattt--ggcaattgaataatataaaaagaaaaatcccaacatttgaaaacacaaaccaact |
19458971 |
T |
|
| Q |
122 |
tagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| |
|
|
| T |
19458970 |
tagaagaatgtactaatgcaatagtaggccaaaa |
19458937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 22063158 - 22063290
Alignment:
| Q |
23 |
tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaaccaaatt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |
|
|
| T |
22063158 |
tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatctgaaaacacaaaccaactt |
22063257 |
T |
|
| Q |
123 |
agaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22063258 |
agaagaaggtactaatgtaatagtaggccaaaa |
22063290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 20189721 - 20189852
Alignment:
| Q |
18 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaacc |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
20189721 |
aaaagtttattcattctctttgtttccttcacgacataaagaaatgttaggcaattgaataatattagaagaacaatcccaacatttgaaaacacaaacc |
20189820 |
T |
|
| Q |
118 |
aaattagaagaaggtactaatgtaatagtagg |
149 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |
|
|
| T |
20189821 |
aacttagaagaatgtactaatgtaatagtagg |
20189852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 40999143 - 40999280
Alignment:
| Q |
18 |
aaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaacc |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
40999143 |
aaaagtttcttcgttctctttgtttccttcataacataaagaaatgttaagcaattgaataatattagaagaagaatcccaaaatttgaaaacacaaacc |
40999242 |
T |
|
| Q |
118 |
aaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
40999243 |
aatttagaagaagctactaatgtcatagtaggccaaaa |
40999280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1778 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold1778
Description:
Target: scaffold1778; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 1370 - 1262
Alignment:
| Q |
47 |
catgacataaagaaatgttaggcaattgaataatattataagaagaatcccaacatttgaaaacacaaaccaaattagaagaaggtactaatgtaatagt |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1370 |
catgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt |
1271 |
T |
|
| Q |
147 |
aggccaaaa |
155 |
Q |
| |
|
||||||||| |
|
|
| T |
1270 |
aggccaaaa |
1262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 16348161 - 16348111
Alignment:
| Q |
105 |
gaaaacacaaaccaaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16348161 |
gaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaa |
16348111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 16346333 - 16346401
Alignment:
| Q |
87 |
agaagaatcccaacatttgaaaacacaaaccaaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
||||||| |||||||||| | ||||| ||||| || || |||||||||| |||||||||||||||||| |
|
|
| T |
16346333 |
agaagaaccccaacatttaactacacataccaactttgatgaaggtactagtgtaatagtaggccaaaa |
16346401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 20417096 - 20417028
Alignment:
| Q |
87 |
agaagaatcccaacatttgaaaacacaaaccaaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
20417096 |
agaagaatcccaacatttaactacacataccaactttgatgaaggtactaatgtaatagtaggccaaaa |
20417028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 20416048 - 20416116
Alignment:
| Q |
87 |
agaagaatcccaacatttgaaaacacaaaccaaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||| || || ||||||| ||||||||||||||||||||| |
|
|
| T |
20416048 |
agaagaatcccaacatttaactacacataccaactttgatgaaggtattaatgtaatagtaggccaaaa |
20416116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 20418620 - 20418688
Alignment:
| Q |
87 |
agaagaatcccaacatttgaaaacacaaaccaaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
||||||| |||||||||| | ||||| ||||| || || |||||||||| |||||||||||||||||| |
|
|
| T |
20418620 |
agaagaaccccaacatttaactacacataccaactttgatgaaggtactagtgtaatagtaggccaaaa |
20418688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 8690 - 8622
Alignment:
| Q |
87 |
agaagaatcccaacatttgaaaacacaaaccaaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|||||||| |||||| || | ||||| ||||| || || |||||||||| |||||||||||||||||| |
|
|
| T |
8690 |
agaagaattccaacaattaactacacataccaactttgatgaaggtactagtgtaatagtaggccaaaa |
8622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 34404 - 34336
Alignment:
| Q |
87 |
agaagaatcccaacatttgaaaacacaaaccaaattagaagaaggtactaatgtaatagtaggccaaaa |
155 |
Q |
| |
|
|||||||| |||||| || | ||||| ||||| || || |||||||||| |||||||||||||||||| |
|
|
| T |
34404 |
agaagaattccaacaattaactacacataccaactttgatgaaggtactagtgtaatagtaggccaaaa |
34336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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