View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21324_low_21 (Length: 237)
Name: NF21324_low_21
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_low_21 |
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| [»] scaffold0078 (1 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 15379213 - 15379418
Alignment:
| Q |
13 |
gagatgaatcttgttttgagaaaaatatattttacgtaaccttcatttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagtttta |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15379213 |
gagatgaatcttgttttgagaaaaatatattttacataaccttcatttaggatgaatcttgtttgcgttaccttgttggagcaactttgttttagtttta |
15379312 |
T |
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| Q |
113 |
ctcttggaggtagaaaactaagttttagattaaactcacatgactttgcttcatcgtttgttcatcaatataaattgtctctagtagatggttcatgact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15379313 |
ctcttggaggtagaaaactaagttttagattaaactcacatgactttgcttcatcggttgttcatctatataaattgtctctagtagatggttcatgact |
15379412 |
T |
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| Q |
213 |
ccctag |
218 |
Q |
| |
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|||||| |
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| T |
15379413 |
ccctag |
15379418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 16689388 - 16689548
Alignment:
| Q |
56 |
catttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagttttactcttggaggtagaaaactaagttttagattaaactcacatga |
155 |
Q |
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||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
16689388 |
catttaggatgaatcttgtttgtgttaccctgttggagcaactttgttttagttttcctcttggaggtagaaaactaagtttgagattaaactcacataa |
16689487 |
T |
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| Q |
156 |
ctttgcttcatcgtttgttcatcaatataaattgtctctagtagatggttcatgactccct |
216 |
Q |
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| T |
16689488 |
ccttgcttcatcctttgttcatctatataaactgtctctagtagatggttcatcactccct |
16689548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 12057 - 12220
Alignment:
| Q |
51 |
accttcatttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagttttactcttggaggtagaaaactaagttttagattaaactca |
150 |
Q |
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||||| |||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
12057 |
acctttatttagcatgaaacttgtttgtgttaccttgttggagcaactttgttttagttttacta--ggaggtagaaaactaagtttgagattaaactca |
12154 |
T |
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| Q |
151 |
catgactttgcttcatcgtttgttcatcaatataaattgtctctagtagatggttcatgactccct |
216 |
Q |
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||| || || ||||||| |||||||||| |||||||| |||||| || |||||| |||||||||| |
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| T |
12155 |
cataacctttcttcatcctttgttcatctatataaatggtctctgctatatggttaatgactccct |
12220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 39815919 - 39815743
Alignment:
| Q |
35 |
aaatatattttacgtaaccttcatttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagttttactcttggaggtagaaaactaag |
134 |
Q |
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|||||| ||| | ||||||||||||| ||||||||| | |||| ||| | |||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
39815919 |
aaatatctttcatgtaaccttcatttgggatgaatcttatttgtgtttctttgttggatgaaccttgttttagttttactcttggaggtatgaaactaag |
39815820 |
T |
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| Q |
135 |
ttttagattaaactcacatgactttgcttcatcgtttgttcatcaatataaattgtctctagtagatggttcatgact |
212 |
Q |
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||| || || |||||||| || || ||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
39815819 |
tttgag-ttgcactcacataaccttacttcatcctttgttcatctatataaattgtctctagtagatgattcatgact |
39815743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 178
Target Start/End: Original strand, 25376951 - 25377078
Alignment:
| Q |
51 |
accttcatttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagttttactcttggaggtagaaaactaagttttagattaaactca |
150 |
Q |
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|||||| ||||||||||||| ||| || ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
25376951 |
accttcttttaggatgaatcttgtctgtgtttctttgttggagcaactttgttttagttttactcttggaggtagaaaagtaagtttgagattaaactca |
25377050 |
T |
|
| Q |
151 |
catgactttgcttcatcgtttgttcatc |
178 |
Q |
| |
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| |||||| |||||| |||||||||| |
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| T |
25377051 |
tgtaactttgtttcatcctttgttcatc |
25377078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 25404950 - 25405041
Alignment:
| Q |
58 |
tttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagttttactcttgga-ggtagaaaactaagttttagattaaact |
148 |
Q |
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||||||||||||| |||||| || | |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
25404950 |
tttaggatgaatcttgtttgtttttctttgttggaacaactttgttttagttttactcttggagggtagaaaagtaagtttgagattaaact |
25405041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 25405041 - 25405088
Alignment:
| Q |
169 |
tttgttcatcaatataaattgtctctagtagatggttcatgactccct |
216 |
Q |
| |
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|||||||||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
25405041 |
tttgttcatctatacaaatggtctctagtagatggttcatgactccct |
25405088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 55645 - 55525
Alignment:
| Q |
58 |
tttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagttttactcttggaggtagaaaactaagttttagattaaactcacatgact |
157 |
Q |
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||||||||||||| |||||| || | |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||| |
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| T |
55645 |
tttaggatgaatcttgtttgtttttctttgttggaacaactttgttttagttttactcttggaggtagaaaagtaagtttgagattaaactcacgtaact |
55546 |
T |
|
| Q |
158 |
ttgcttcatcgtttgttcatc |
178 |
Q |
| |
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||| |||||| |||||||||| |
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| T |
55545 |
ttgtttcatcctttgttcatc |
55525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 30178313 - 30178477
Alignment:
| Q |
51 |
accttcatttaggatgaatcatgtttgcgttaccttgttggagcaactttgttttagttttactcttggaggtagaaaactaagttttagattaaactca |
150 |
Q |
| |
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||||| |||||||||||||| | |||| || | |||||||| ||||| |||||||||||||||||||||||| ||||||||| | || || |||| | |
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| T |
30178313 |
acctttatttaggatgaatcttatttgtatttctttgttggatgaacttgattttagttttactcttggaggtaggaaactaagtctgaggttgaactta |
30178412 |
T |
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| Q |
151 |
catgactttgcttcatcgtttgttcatcaatataaattgtctctagtagatggttcatgactccc |
215 |
Q |
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||| |||||| |||||| |||||| ||| ||||||| | || || | ||||||||||| ||||| |
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| T |
30178413 |
cataactttgtttcatcctttgttgatctatataaacagactttatttgatggttcatggctccc |
30178477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 25860156 - 25860051
Alignment:
| Q |
109 |
tttactcttggaggtagaaaactaagttttagattaaactcacatgactttgcttcatcgtttgttcatcaatataaattgtctctagtagatggttcat |
208 |
Q |
| |
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|||||| || ||||||| ||||||||||| ||||| |||||| || ||||| |||| || || ||| ||| ||||||||| |||||||| |||||||||| |
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| T |
25860156 |
tttactgttagaggtaggaaactaagtttgagattgaactcatataactttacttcctctttagttgatctatataaattatctctagttgatggttcat |
25860057 |
T |
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| Q |
209 |
gactcc |
214 |
Q |
| |
|
|||||| |
|
|
| T |
25860056 |
gactcc |
25860051 |
T |
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