View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21324_low_22 (Length: 233)
Name: NF21324_low_22
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 7926577 - 7926379
Alignment:
| Q |
19 |
ctatatccattagccatctactatacgtaaataaccacatatttgaattgtgttaaccacttacgttaatggaaaacttgtcaaattttagttgtttaaa |
118 |
Q |
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| T |
7926577 |
ctatatccattagccatctactatacgtaaataaccacatatttgaattgtgttaaccacttacgttaatggaaaacttgtcaaattttagttgttcaaa |
7926478 |
T |
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| Q |
119 |
taacacaactgttccgaaatttctactagatatgccggggtgtccttatcctctaactgaaaatgtatttatgaggataatagtaccttcatgtttctt |
217 |
Q |
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| T |
7926477 |
taacacaactgttccgaaatttctactagatatgccgggttgtccttatcctctaactgaaaatgtatttatgaggataatagtaccttcatgtttctt |
7926379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 29136825 - 29136770
Alignment:
| Q |
21 |
atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacc |
76 |
Q |
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| T |
29136825 |
atattcattagccatatactgaacgtaattaaccacttatttgaattgtgttaacc |
29136770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 46648871 - 46648927
Alignment:
| Q |
21 |
atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacca |
77 |
Q |
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| T |
46648871 |
atattcattaaccatcaattaaacgtaattaaccatatatttgaattgtgttaacca |
46648927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 12908354 - 12908322
Alignment:
| Q |
97 |
tgtcaaattttagttgtttaaataacacaactg |
129 |
Q |
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| T |
12908354 |
tgtcaaattttagttgttcaaataacacaactg |
12908322 |
T |
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