View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21324_low_5 (Length: 428)
Name: NF21324_low_5
Description: NF21324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21324_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 67 - 412
Target Start/End: Complemental strand, 12720390 - 12720045
Alignment:
| Q |
67 |
gcaaaaaacaccgatctttccaacacgatcgtttgcaacgagtgcaagaaacggaggccggggaaagggtatcggtgcacggtgtgtaactacaatcttc |
166 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12720390 |
gcaacaaacaccgatctttccaacacgattgtttgcaacgagtgcaagaaacgaaggtcggggaaagtgtatcggtgcacggtgtgtaactacaatcttc |
12720291 |
T |
|
| Q |
167 |
atgcattttgtgctaagaataaagttaatggtcttcaagctaatggtattaggcttcctgaaaaaggaagtgttctttctgctgctgctaaagttgcttc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12720290 |
atgcattttgtgctaagaataaagttaatggtcttcaagctaatggtattaggcttcctgaaaaaccaagtgttctttctgctgctgctaaagttgcttc |
12720191 |
T |
|
| Q |
267 |
tcaagttgtgattgaatttattggtgggtttgttgaaggtattggtgaaagtatgggtgaagttcttgttcaaaatattaccaaaggaggaaatggaact |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12720190 |
tcaagttgtgattgaatttattggtgggtttgttgaaggtattggtgaaagtatgggtgaagttcttgttcaaaatattaccaaaggaggaaatggaact |
12720091 |
T |
|
| Q |
367 |
ctaaccagtgctaataataatactactacaaaacctcgtaaataat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12720090 |
ctaaccagtgctaataataatactactacaaaacctcgtaaataat |
12720045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University