View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21325_high_4 (Length: 447)

Name: NF21325_high_4
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21325_high_4
NF21325_high_4
[»] chr7 (7 HSPs)
chr7 (107-441)||(20129170-20129504)
chr7 (103-441)||(28852999-28853339)
chr7 (100-256)||(49023868-49024024)
chr7 (264-441)||(49023387-49023566)
chr7 (102-198)||(5781950-5782046)
chr7 (102-208)||(9215270-9215375)
chr7 (109-198)||(34960203-34960292)
[»] chr8 (4 HSPs)
chr8 (100-309)||(29314569-29314778)
chr8 (99-198)||(34928606-34928705)
chr8 (101-196)||(18205433-18205528)
chr8 (100-196)||(19793352-19793448)
[»] chr5 (4 HSPs)
chr5 (52-102)||(35503415-35503465)
chr5 (99-196)||(18440601-18440698)
chr5 (107-198)||(7692333-7692424)
chr5 (103-198)||(36602773-36602868)
[»] chr3 (3 HSPs)
chr3 (100-198)||(1185302-1185400)
chr3 (102-198)||(51280606-51280702)
chr3 (136-198)||(47173718-47173780)
[»] chr4 (2 HSPs)
chr4 (99-198)||(33800514-33800613)
chr4 (105-198)||(4428795-4428888)
[»] chr2 (1 HSPs)
chr2 (136-198)||(18180653-18180715)
[»] chr6 (1 HSPs)
chr6 (120-200)||(26332240-26332320)
[»] chr1 (2 HSPs)
chr1 (120-200)||(6577375-6577455)
chr1 (102-198)||(48714548-48714644)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 107 - 441
Target Start/End: Complemental strand, 20129504 - 20129170
Alignment:
Q  107 gtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtattagctat 206  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  20129504 gtgtttggcctaacttttttgaggtttagaagctactttaaaactaaaattgaaaataaaaactttgtaaattaagataaagttgtttggtattagctat 20129405  T
Q  207 tttttataagttcaaaaaataactttaagcttaaaaagtttggtaatttannnnnnncacttataattttctttagtagttatcataattgaattaagca 306  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  20129404 tttttataagttcagaaaataactttaagcttaaaaagtttggtaatttatttttttcacttataattttctttagtagttatcataattgaattaagca 20129305  T
Q  307 tttaactaatcannnnnnnnnacaaatgcatttaattaataggtattatcactaattttatacatatgcatctaattattgatagagatatttcacatgc 406  Q
    |||||||||||          ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20129304 tttaactaatcggtttttttgacaaatgcatttaattaataggtattatcactatttttatacatatgcatctaattattgatagagatatttcacatgc 20129205  T
Q  407 acctaatttaacacattcatataacttcatctcac 441  Q
    |||||||||||||||||||||||||||||| ||||    
T  20129204 acctaatttaacacattcatataacttcatatcac 20129170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 103 - 441
Target Start/End: Original strand, 28852999 - 28853339
Alignment:
Q  103 gggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtattag 202  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28852999 gggtgtgtttggcctagcttttttgaggtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtattag 28853098  T
Q  203 c--tattttttataagttcaaaaaataactttaagcttaaaaagtttggtaatttannnnnnncacttataattttctttagtagttatcataattgaat 300  Q
    |  ||||||||||| ||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||    
T  28853099 ctatattttttataggttcaaaaaataactttaagcctaaaaagtttggtaatttagttttttcacttataattttctttattagttatcataattgaat 28853198  T
Q  301 taagcatttaactaatcannnnnnnnnacaaatgcatttaattaataggtattatcactaattttatacatatgcatctaattattgatagagatatttc 400  Q
    |||||||||||||||||          ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28853199 taagcatttaactaatcggtttttttgacaaatgcatttaattaataggtattatcactatttttatacatatgcatctaattattgatagagatatttc 28853298  T
Q  401 acatgcacctaatttaacacattcatataacttcatctcac 441  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  28853299 acatgcacctaatttaacacgttcatataacttcatatcac 28853339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 49024024 - 49023868
Alignment:
Q  100 taagggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtat 199  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49024024 taagggtgtgtttggcctagtttttttgaggtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttatttggtat 49023925  T
Q  200 tagctattttttataagttcaaaaaataactttaagcttaaaaagtttggtaattta 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49023924 tagctattttttataagttcaaaaaataactttaagcttaaaaagtttggtaattta 49023868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 441
Target Start/End: Complemental strand, 49023566 - 49023387
Alignment:
Q  264 cacttataattttctttagtagttatcataattgaattaagcatttaactaatcannnnnnnnnacaaatgcatttaattaataggtattatcactaatt 363  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||| |||          | ||||||||||||||    ||||||||||||| ||    
T  49023566 cacttataattttctttagtagt---cataattgaattaagcatttaactgatcggtttttttgaaaaatgcatttaatt----ggtattatcactattt 49023474  T
Q  364 tt---------atacatatgcatctaattattgatagagatatttcacatgcacctaatttaacacattcatataacttcatctcac 441  Q
    ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49023473 ttttattttttatacatatgcatctaattattgatagagatatttcacatgcacctaatttaacacattcatataacttcatatcac 49023387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 5781950 - 5782046
Alignment:
Q  102 agggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    ||||||||||||||| | ||||||||| |  ||||||||||||||||  ||||||| |||||| || ||||  |||| |||||||||||||||||||    
T  5781950 agggtgtgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttaaaaatgaagttaaagttgtttggta 5782046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 9215375 - 9215270
Alignment:
Q  102 agggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtatta 201  Q
    ||||||||||||||| |  |||||  | || ||||||||||||||||||||||||||  || || |||||| |||||||||||||||||| |||||| ||    
T  9215375 agggtgtgtttggcccagttttttgaaagtctagaagctactttaaaactaaagttgctaaaaa-aactttataaattaagttaaagttgattggtagta 9215277  T
Q  202 gctattt 208  Q
     ||||||    
T  9215276 tctattt 9215270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 34960292 - 34960203
Alignment:
Q  109 gtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    |||||||||| ||||||||| |  ||||| ||||||||||  ||||||| |||||| || ||||  |||| || ||||||||||||||||    
T  34960292 gtttggcctaacttttttgaagcatagaaactactttaaatttaaagttaaaaatatgagctttaaaaatgaaattaaagttgtttggta 34960203  T

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Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 100 - 309
Target Start/End: Original strand, 29314569 - 29314778
Alignment:
Q  100 taagggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtat 199  Q
    |||||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||     
T  29314569 taagggtgcgtttggcctggcttttttgaggtttagaagctactttaaaactaaagttgaaaataagaactttgtaaacaaagttaaagttgtttggtaa 29314668  T
Q  200 tagctattttttataagttcaaaaaataactttaagcttaaaaagtttggtaatttannnnnnncacttataattttctttagtagttatcataattgaa 299  Q
    || ||||||||||| | || |||||||||||||||||  ||||||||||||||||||       ||||||||||||||||||| ||||||| ||||||||    
T  29314669 tatctattttttatgactttaaaaaataactttaagcacaaaaagtttggtaatttatttttttcacttataattttctttagaagttatcgtaattgaa 29314768  T
Q  300 ttaagcattt 309  Q
    ||||||||||    
T  29314769 ttaagcattt 29314778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 34928705 - 34928606
Alignment:
Q  99 ctaagggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    |||||||||||||||||| | ||||||||| |  ||||||||||||||||  ||||||| |||||| || ||||  |||| |||||||||||||||||||    
T  34928705 ctaagggtgtgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggta 34928606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 18205528 - 18205433
Alignment:
Q  101 aagggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttgg 196  Q
    |||||||||||||||| | ||||||| ||| |||||||| |||||||||  |||||| | ||||||||||||  |||| |||| ||||||||||||    
T  18205528 aagggtgtgtttggcccaactttttttatggttagaagcaactttaaaatcaaagttaataataagaactttaaaaatgaagtaaaagttgtttgg 18205433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 19793448 - 19793352
Alignment:
Q  100 taagggtgtgtttggc-ctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaatt-aagttaaagttgtttgg 196  Q
    |||||||||||||||| |||| |||||||| || || |||||||||||| | ||||||||||||| | |||||| ||| || |||||||| ||||||||    
T  19793448 taagggtgtgtttggctctat-ttttttgaggtctaaaagctactttaataataaagttgaaaattaaaacttt-taagttaaagttaaatttgtttgg 19793352  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 35503465 - 35503415
Alignment:
Q  52 ttaatatgttaattttttgaagaagagttaagatgtttttagtccatctaa 102  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35503465 ttaatatgttaattttttgaagtagagttaagatgtttttagtccatctaa 35503415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 18440601 - 18440698
Alignment:
Q  99 ctaagggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttgg 196  Q
    |||||||||||||||||| | ||||||| ||| | |||||| |||||||||  |||| | | ||||||||||||  |||| |||| ||||||||||||    
T  18440601 ctaagggtgtgtttggcccaactttttttatggtcagaagcaactttaaaaacaaaggtaataataagaactttaaaaatgaagtaaaagttgtttgg 18440698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 7692333 - 7692424
Alignment:
Q  107 gtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    |||||||||| | |||||||||    || |||||||||||||  ||||||| |||||| || ||||  |||||||||| |||||||||||||    
T  7692333 gtgtttggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggta 7692424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 36602773 - 36602868
Alignment:
Q  103 gggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    ||||| |||||||| | |||||||||    || |||||||||||||  ||||||| |||||| || ||||  |||||||||| |||||||||||||    
T  36602773 gggtgcgtttggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggta 36602868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 1185400 - 1185302
Alignment:
Q  100 taagggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    ||||||||||||||||| | ||||||||| |  ||||||||||||||||  ||||||| |||||| || ||||  |||| |||||||||||||||||||    
T  1185400 taagggtgtgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggta 1185302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 51280606 - 51280702
Alignment:
Q  102 agggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    ||||| ||||||||| | ||||||||| |  ||||||||||||||||  ||||||| ||||||  | ||||  |||| |||||||||||||||||||    
T  51280606 agggtatgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatataagctttagaaatgaagttaaagttgtttggta 51280702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 47173718 - 47173780
Alignment:
Q  136 aagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    |||||||||||||  ||||||| |||||| || ||||  |||||||||| |||||||||||||    
T  47173718 aagctactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggta 47173780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 33800613 - 33800514
Alignment:
Q  99 ctaagggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    ||||||||||||||| || | ||||||||| |  ||||| ||||||||||  ||||||| |||||| || ||||  |||| |||||||||||||||||||    
T  33800613 ctaagggtgtgtttgacccaacttttttgaggcatagaaactactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggta 33800514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 4428795 - 4428888
Alignment:
Q  105 gtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    |||| ||||||| | ||||||||| |  ||||||||||||||||  ||||||| |||||| || ||||  |||| |||||||||||||||||||    
T  4428795 gtgtatttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggta 4428888  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 18180653 - 18180715
Alignment:
Q  136 aagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
    |||||||||||||| ||||||| ||| ||||| ||||  |||| |||||||||||||||||||    
T  18180653 aagctactttaaaaataaagttaaaactaagagctttacaaataaagttaaagttgtttggta 18180715  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 26332240 - 26332320
Alignment:
Q  120 cttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtatt 200  Q
    ||||||||| || || ||| |||||| | | ||||||||||||| | ||||||| |  | |||||||||||||||||||||    
T  26332240 cttttttgaggtataaaagttacttttagaataaagttgaaaattaaaactttgaagctgaagttaaagttgtttggtatt 26332320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 6577375 - 6577455
Alignment:
Q  120 cttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggtatt 200  Q
    ||||||||| || || ||| |||||| | | ||||||||||||| | ||||||| |  | |||||||||||||||||||||    
T  6577375 cttttttgaggtataaaagttacttttagaataaagttgaaaattaaaactttgaagttgaagttaaagttgtttggtatt 6577455  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 48714644 - 48714548
Alignment:
Q  102 agggtgtgtttggcctatcttttttgatgtttagaagctactttaaaactaaagttgaaaataagaactttgtaaattaagttaaagttgtttggta 198  Q
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T  48714644 agggtgcgtttggcccaacttttttgagacataaaagttactttaaatttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggta 48714548  T

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