View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21325_high_9 (Length: 240)

Name: NF21325_high_9
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21325_high_9
NF21325_high_9
[»] chr1 (4 HSPs)
chr1 (14-70)||(41205186-41205242)
chr1 (67-222)||(20324391-20324567)
chr1 (67-189)||(41204901-41205028)
chr1 (14-70)||(20324192-20324248)
[»] chr5 (8 HSPs)
chr5 (67-155)||(18215009-18215098)
chr5 (67-155)||(21757413-21757502)
chr5 (67-155)||(30948997-30949086)
chr5 (187-222)||(18215150-18215185)
chr5 (187-222)||(21757326-21757361)
chr5 (14-70)||(18214810-18214866)
chr5 (14-69)||(21757646-21757701)
chr5 (187-222)||(30949138-30949173)
[»] chr4 (13 HSPs)
chr4 (67-222)||(3493023-3493199)
chr4 (67-155)||(5298676-5298765)
chr4 (67-155)||(27686337-27686426)
chr4 (67-155)||(21850165-21850254)
chr4 (67-155)||(21906028-21906117)
chr4 (67-222)||(17833494-17833670)
chr4 (187-222)||(5298817-5298852)
chr4 (187-222)||(21850078-21850113)
chr4 (187-222)||(21905941-21905976)
chr4 (187-222)||(27686478-27686513)
chr4 (14-70)||(3492824-3492880)
chr4 (14-70)||(5298477-5298533)
chr4 (14-70)||(27686138-27686194)
[»] chr3 (6 HSPs)
chr3 (67-155)||(4375418-4375507)
chr3 (67-155)||(13117960-13118049)
chr3 (187-222)||(4375331-4375366)
chr3 (187-222)||(13118101-13118136)
chr3 (14-70)||(4375650-4375706)
chr3 (14-70)||(13117761-13117817)
[»] chr2 (8 HSPs)
chr2 (67-155)||(4462249-4462338)
chr2 (67-155)||(5342726-5342815)
chr2 (187-222)||(4462162-4462197)
chr2 (187-222)||(5342867-5342902)
chr2 (187-222)||(10887465-10887500)
chr2 (14-70)||(4462481-4462537)
chr2 (14-70)||(5342527-5342583)
chr2 (67-155)||(10887325-10887413)
[»] scaffold0058 (2 HSPs)
scaffold0058 (67-155)||(50228-50317)
scaffold0058 (187-222)||(50369-50404)
[»] chr8 (5 HSPs)
chr8 (117-222)||(31996896-31997021)
chr8 (187-222)||(21993650-21993685)
chr8 (117-155)||(21993560-21993598)
chr8 (14-70)||(31996652-31996708)
chr8 (14-70)||(21993317-21993373)
[»] chr7 (1 HSPs)
chr7 (187-222)||(12700773-12700808)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 41205242 - 41205186
Alignment:
Q  14 agattattctgaagtttgacaatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41205242 agattattctgaagtttgacaattaagacatttgttatgtttaatatcaatgaacaa 41205186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 20324391 - 20324567
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat--------ga 157  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||        ||    
T  20324391 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttatatataacaga 20324490  T
Q  158 aac-accccttgttcaattaaaagaacact-----------aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||| |||| ||||||||||| |||||||||           ||||||||||||||||||||||||||||||||||||    
T  20324491 aacaacccattgttcaattataagaacactaattcattttcaatgcacccttaatatatcttgttaaagcataagac 20324567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 41205028 - 41204901
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat---gaaac-a 161  Q
    ||||||||||| || |||||||| |||| |||||||| |||| |||| | || ||||||||||||||||| |||||||||||||| ||||    |||| |    
T  41205028 acaaaatgatgcaacacatttaacatttaacatgatagttaagaaggaattttggggcaaataatgagaggatattatgcatgaatttatacaaaaacaa 41204929  T
Q  162 ccccttgttcaattaaaagaacactaat 189  Q
    || |||||||||||| ||||||||||||    
T  41204928 cctcttgttcaattataagaacactaat 41204901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 20324192 - 20324248
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  20324192 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 20324248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 18215009 - 18215098
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  18215009 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 18215098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 21757502 - 21757413
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  21757502 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 21757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 30948997 - 30949086
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| ||   | || |||||||||||||||||||||||||||||||| ||||    
T  30948997 acaaaatgatgtaacacatttaatatttaacatgatagttaagaaataattttggggcaaataatgagagaatattatgcatgaatttat 30949086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 18215150 - 18215185
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  18215150 aatgcacccttaatatatcttgttaaagcataagac 18215185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 21757361 - 21757326
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  21757361 aatgcacccttaatatatcttgttaaagcataagac 21757326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 18214810 - 18214866
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  18214810 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 18214866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 21757701 - 21757646
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaaca 69  Q
    |||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||    
T  21757701 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaaca 21757646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 30949138 - 30949173
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    |||||||||||||||||||||||||||| |||||||    
T  30949138 aatgcacccttaatatatcttgttaaagaataagac 30949173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 3493023 - 3493199
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat--------ga 157  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||        ||    
T  3493023 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttatacataacaga 3493122  T
Q  158 aacacccc-ttgttcaattaaaagaacactaat-----------gcacccttaatatatcttgttaaagcataagac 222  Q
    |||| ||| ||||||||||| ||||||| ||||           |||||||||||||||||||||||||||||||||    
T  3493123 aacaacccattgttcaattataagaacattaattcattttcagtgcacccttaatatatcttgttaaagcataagac 3493199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 5298676 - 5298765
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  5298676 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 5298765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 27686337 - 27686426
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  27686337 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 27686426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 21850254 - 21850165
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| ||   | || |||||||||||||||||||||||||||||||| ||||    
T  21850254 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaataattttggggcaaataatgagagaatattatgcatgaatttat 21850165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 21906117 - 21906028
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| ||   | || |||||||||||||||||||||||||||||||| ||||    
T  21906117 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaataattttggggcaaataatgagagaatattatgcatgaatttat 21906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 17833494 - 17833670
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat--------ga 157  Q
    |||||||||||||| |||||||| |||| |||||||| |||| ||   | || |||||||||||||||||||||||||||||||| ||||        ||    
T  17833494 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaataattttggggcaaataatgagagaatattatgcatgaatttatacataacaga 17833593  T
Q  158 aacacccc-ttgttcaattaaaagaacactaat-----------gcacccttaatatatcttgttaaagcataagac 222  Q
    |||| | | ||||||||||| ||||||| ||||           |||||||||||||||||||||||||||||||||    
T  17833594 aacaacacattgttcaattataagaacattaattcattttcaatgcacccttaatatatcttgttaaagcataagac 17833670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 5298817 - 5298852
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  5298817 aatgcacccttaatatatcttgttaaagcataagac 5298852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 21850113 - 21850078
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  21850113 aatgcacccttaatatatcttgttaaagcataagac 21850078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 21905976 - 21905941
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  21905976 aatgcacccttaatatatcttgttaaagcataagac 21905941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 27686478 - 27686513
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  27686478 aatgcacccttaatatatcttgttaaagcataagac 27686513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 3492824 - 3492880
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  3492824 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 3492880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 5298477 - 5298533
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  5298477 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 5298533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 27686138 - 27686194
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  27686138 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 27686194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 4375507 - 4375418
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  4375507 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 4375418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 13117960 - 13118049
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  13117960 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 13118049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 4375366 - 4375331
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  4375366 aatgcacccttaatatatcttgttaaagcataagac 4375331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 13118101 - 13118136
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  13118101 aatgcacccttaatatatcttgttaaagcataagac 13118136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 4375706 - 4375650
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  4375706 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 4375650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 13117761 - 13117817
Alignment:
Q  14 agattattctgaagtttgacaattta-gacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  13117761 agattattctgaagtttgacaaattaggacattt-ttatgtttcatatcaatgaacaa 13117817  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 4462338 - 4462249
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  4462338 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 4462249  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 5342726 - 5342815
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || |||||||||||||||||||||||||||||||| ||||    
T  5342726 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataatgagagaatattatgcatgaatttat 5342815  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 4462197 - 4462162
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  4462197 aatgcacccttaatatatcttgttaaagcataagac 4462162  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 5342867 - 5342902
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  5342867 aatgcacccttaatatatcttgttaaagcataagac 5342902  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 10887465 - 10887500
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  10887465 aatgcacccttaatatatcttgttaaagcataagac 10887500  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 4462537 - 4462481
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  4462537 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 4462481  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 5342527 - 5342583
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  5342527 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 5342583  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 10887325 - 10887413
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaattggggcaaataatgagagaatattatgcatgaaattat 155  Q
    ||||||||||||||   |||||| |||| ||||||||||||| |||||| ||  | |||||||||||  ||||||||||| ||| ||||    
T  10887325 acaaaatgatgtaacttatttaacatttaacatgataattaagaagggattttagacaaataatgaggaaatattatgcaagaagttat 10887413  T

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Target: scaffold0058 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 50228 - 50317
Alignment:
Q  67 acaaaatgatgtaatacatttaaaatttgacatgataattaataagggaatt-ggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||| |||||||| |||| |||||||| |||| || | | || ||||||||||| |||||||||||||||||||| ||||    
T  50228 acaaaatgatgtaacacatttaacatttaacatgatagttaagaaagaattttggggcaaataaggagagaatattatgcatgaatttat 50317  T

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Target: scaffold0058; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 50369 - 50404
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    |||||||| |||||||||||||||||||||||||||    
T  50369 aatgcaccattaatatatcttgttaaagcataagac 50404  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 31996896 - 31997021
Alignment:
Q  117 ttggggcaaataatgagagaatattatgcatgaaattat--------gaaacacccc-ttgttcaattaaaagaacactaat-----------gcaccct 196  Q
    |||||||||||||||||||||||||||||||||| ||||        |||||| ||| ||||||||||| ||||||||||||           |||||||    
T  31996896 ttggggcaaataatgagagaatattatgcatgaatttatacataatagaaacaacccattgttcaattataagaacactaattcattttcaatgcaccct 31996995  T
Q  197 taatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||    
T  31996996 taatatatcttgttaaagcataagac 31997021  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 21993650 - 21993685
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  21993650 aatgcacccttaatatatcttgttaaagcataagac 21993685  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 21993560 - 21993598
Alignment:
Q  117 ttggggcaaataatgagagaatattatgcatgaaattat 155  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  21993560 ttggggcaaataatgagagaatattatgcatgaatttat 21993598  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 31996652 - 31996708
Alignment:
Q  14 agattattctgaagtttgac-aatttagacatttgttatgtttaatatcaatgaacaa 70  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  31996652 agattattctgaagtttgacaaattaagacattt-ttatgtttcatatcaatgaacaa 31996708  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 21993317 - 21993373
Alignment:
Q  14 agattattctgaagtttgacaattta-gacatttgttatgtttaatatcaatgaacaa 70  Q
    ||||||||||||||||| |||| ||| ||||||| |||||||| ||||||||||||||    
T  21993317 agattattctgaagtttaacaaattaagacattt-ttatgtttcatatcaatgaacaa 21993373  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 12700773 - 12700808
Alignment:
Q  187 aatgcacccttaatatatcttgttaaagcataagac 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  12700773 aatgcacccttaatatatcttgttaaagcataagac 12700808  T

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