View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21325_low_1 (Length: 636)

Name: NF21325_low_1
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21325_low_1
NF21325_low_1
[»] chr4 (7 HSPs)
chr4 (18-77)||(39188165-39188224)
chr4 (558-614)||(18656293-18656349)
chr4 (559-614)||(7040546-7040601)
chr4 (559-614)||(23564666-23564721)
chr4 (561-614)||(23566363-23566415)
chr4 (566-614)||(52518945-52518993)
chr4 (566-614)||(52520787-52520835)
[»] chr1 (2 HSPs)
chr1 (559-614)||(17449495-17449550)
chr1 (566-614)||(16808576-16808624)
[»] chr3 (3 HSPs)
chr3 (558-614)||(17402772-17402828)
chr3 (559-614)||(1140186-1140241)
chr3 (559-614)||(6789804-6789860)
[»] chr8 (6 HSPs)
chr8 (559-614)||(3375425-3375480)
chr8 (559-614)||(30224415-30224470)
chr8 (558-614)||(25249191-25249247)
chr8 (560-614)||(5567611-5567665)
chr8 (573-614)||(36535856-36535897)
chr8 (559-615)||(6428925-6428981)
[»] chr6 (5 HSPs)
chr6 (559-614)||(5377063-5377118)
chr6 (559-614)||(5378918-5378973)
chr6 (559-615)||(1088644-1088700)
chr6 (566-614)||(19645298-19645346)
chr6 (290-332)||(28629681-28629723)
[»] chr2 (1 HSPs)
chr2 (559-614)||(29758305-29758360)
[»] chr7 (7 HSPs)
chr7 (559-614)||(20046486-20046541)
chr7 (559-614)||(44963348-44963403)
chr7 (552-614)||(28014257-28014319)
chr7 (566-615)||(4895768-4895817)
chr7 (566-614)||(28124585-28124633)
chr7 (566-614)||(28126412-28126460)
chr7 (559-614)||(25471762-25471817)
[»] scaffold0189 (1 HSPs)
scaffold0189 (564-611)||(19133-19180)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 39188165 - 39188224
Alignment:
Q  18 ttaactgttaaagcctacaactttatttatagcgaaaataatcgagcaccaatgcataaa 77  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39188165 ttaactgttaaagcctacaactttatttatagggaaaataatcgagcaccaatgcataaa 39188224  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 558 - 614
Target Start/End: Complemental strand, 18656349 - 18656293
Alignment:
Q  558 ttgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  18656349 ttgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 18656293  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 7040601 - 7040546
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  7040601 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 7040546  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 559 - 614
Target Start/End: Original strand, 23564666 - 23564721
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||| |||||||    
T  23564666 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaaaatagcaa 23564721  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 614
Target Start/End: Original strand, 23566363 - 23566415
Alignment:
Q  561 ttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  23566363 ttaagaatcatggaatcatag-gagaaaagtcatagatgtaagcaagatagcaa 23566415  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 614
Target Start/End: Complemental strand, 52518993 - 52518945
Alignment:
Q  566 aatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| |||||    
T  52518993 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaa 52518945  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 614
Target Start/End: Complemental strand, 52520835 - 52520787
Alignment:
Q  566 aatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||| ||||||| ||||| ||||||| |||| |||||    
T  52520835 aatcatggaatcatagggagaaagatcatagatgtaagaaagagagcaa 52520787  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 17449550 - 17449495
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  17449550 tgttaagaatcatggaatcatagggagaaaggtcatagatgtaagcaagatagcaa 17449495  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 614
Target Start/End: Original strand, 16808576 - 16808624
Alignment:
Q  566 aatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| |||||    
T  16808576 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaa 16808624  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 558 - 614
Target Start/End: Original strand, 17402772 - 17402828
Alignment:
Q  558 ttgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  17402772 ttgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 17402828  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 1140241 - 1140186
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  1140241 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 1140186  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 6789860 - 6789804
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagc-aagatagcaa 614  Q
    ||||||||||||||||||||||| |||| | |||||| |||||||| ||||||||||    
T  6789860 tgttaagaatcatggaatcatagggagagaagtcatagatgtaagcaaagatagcaa 6789804  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Original strand, 3375425 - 3375480
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  3375425 tgttaagaatcatggaatcatagggagaaaggtcatagatgtaagtaagatagcaa 3375480  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 30224470 - 30224415
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  30224470 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 30224415  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 558 - 614
Target Start/End: Complemental strand, 25249247 - 25249191
Alignment:
Q  558 ttgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||    
T  25249247 ttgttaagaatcatgaaatcatagggagaaaagtcatatatgtaagcaagatagcaa 25249191  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 614
Target Start/End: Complemental strand, 5567665 - 5567611
Alignment:
Q  560 gttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  5567665 gttaaaaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 5567611  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 573 - 614
Target Start/End: Original strand, 36535856 - 36535897
Alignment:
Q  573 gaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  36535856 gaatcatagggagaaaggtcatagatgtaagcaagatagcaa 36535897  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 615
Target Start/End: Complemental strand, 6428981 - 6428925
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaaa 615  Q
    ||||||||||||||||||||||  |||| | |||||| ||||||| |||||||||||    
T  6428981 tgttaagaatcatggaatcataaggagagaagtcatagatgtaagtaagatagcaaa 6428925  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 5377118 - 5377063
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  5377118 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 5377063  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 5378973 - 5378918
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  5378973 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 5378918  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 615
Target Start/End: Original strand, 1088644 - 1088700
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaaa 615  Q
    |||||||||||||||||||||||  ||| | |||||| |||||||||||||||||||    
T  1088644 tgttaagaatcatggaatcataggaagagaagtcatagatgtaagcaagatagcaaa 1088700  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 614
Target Start/End: Original strand, 19645298 - 19645346
Alignment:
Q  566 aatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||| |||||| |||||| |||||| |||||||||||    
T  19645298 aatcatggaatcatagggagaaaagtcatagatgtaaccaagatagcaa 19645346  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 28629723 - 28629681
Alignment:
Q  290 aaagattaagcacctaggtgcctaaaaactccagaggagtcgg 332  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  28629723 aaagactaagcaacttggtgcctaaaaactccagaggagtcgg 28629681  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 29758360 - 29758305
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  29758360 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaa 29758305  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 559 - 614
Target Start/End: Original strand, 20046486 - 20046541
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||| |||||||||    
T  20046486 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcgagatagcaa 20046541  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 559 - 614
Target Start/End: Complemental strand, 44963403 - 44963348
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||    
T  44963403 tgttaagaatcatggaatcatagggagaaaagtcatagatgtaagtaagatagcaa 44963348  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 614
Target Start/End: Original strand, 28014257 - 28014319
Alignment:
Q  552 ttgtttttgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||| |||||| |||||||| |||||||| ||||||| ||||| ||||||||||||||||||    
T  28014257 ttgttgttgttatgaatcatgaaatcatagggagaaagatcatagatgtaagcaagatagcaa 28014319  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 566 - 615
Target Start/End: Complemental strand, 4895817 - 4895768
Alignment:
Q  566 aatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaaa 615  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| ||||||    
T  4895817 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaaa 4895768  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 614
Target Start/End: Original strand, 28124585 - 28124633
Alignment:
Q  566 aatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| |||||    
T  28124585 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaa 28124633  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 614
Target Start/End: Original strand, 28126412 - 28126460
Alignment:
Q  566 aatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| |||||    
T  28126412 aatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaa 28126460  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 614
Target Start/End: Original strand, 25471762 - 25471817
Alignment:
Q  559 tgttaagaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatagcaa 614  Q
    ||||| ||||||||||||||||  ||||||| ||||| ||||||| ||||||||||    
T  25471762 tgttatgaatcatggaatcataaggagaaagatcatagatgtaagaaagatagcaa 25471817  T

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Target: scaffold0189 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 611
Target Start/End: Complemental strand, 19180 - 19133
Alignment:
Q  564 agaatcatggaatcatagtgagaaaggtcataaatgtaagcaagatag 611  Q
    |||||||||||||||||| ||||||  ||||| |||||||||||||||    
T  19180 agaatcatggaatcatagggagaaaaatcatagatgtaagcaagatag 19133  T

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