View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21325_low_11 (Length: 220)
Name: NF21325_low_11
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21325_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 28312768 - 28312952
Alignment:
| Q |
20 |
catcgcaattcaaattcatcattcaaattcccaaatgcttttggtacatatagaaacgacatcatcacctaccaaggtgatgccattgcatctaatggca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
28312768 |
catcgcaattcaaattcatcattcaaattcccaaatgcttttggtccatatagaaacgacatcatcacctaccaaggtgatgccgttgaatctaatggca |
28312867 |
T |
|
| Q |
120 |
ccattcaacttactaatatagaaaacgatacaaacatgccttatagtgcgggcagagcctcttatattcttccaatacgcctttg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28312868 |
ccattcaacttactaatatagaaaacgatacaaacatgccttatagtgcgggcagagcctcttatattcttccaatacgcctttg |
28312952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 28315943 - 28316088
Alignment:
| Q |
58 |
ttttggtacatatagaaacgacatcatcacctaccaaggtgatgccattgcatctaatggcaccattcaacttactaatatagaaaacgatacaaacatg |
157 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| | ||||| | |
|
|
| T |
28315943 |
ttttggtccatatagaaacgaaatcatcacctaccaaggtgatgccattgcatcaaatggtaccattcaacttactaaagtagaaaacggcataaacaag |
28316042 |
T |
|
| Q |
158 |
ccttatagtgcgggcagagcctcttatattcttccaatacgccttt |
203 |
Q |
| |
|
|| | ||||| ||||||||||||||| | ||||||||| ||||| |
|
|
| T |
28316043 |
ccatttagtgttggcagagcctcttatgctattccaatacaccttt |
28316088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 28320258 - 28320395
Alignment:
| Q |
66 |
catatagaaacgacatcatcacctaccaaggtgatgccattgcatctaatggcaccattcaacttactaatatagaaaacgatacaaacatgccttatag |
165 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||||||| ||| ||| ||||| ||||||||||||||||| || | |||| | ||||||||| ||||| |
|
|
| T |
28320258 |
catatataaacgacatcatcaactacgaaggtgatgccgttgaatcaaatggtaccattcaacttactaaagtaaataacggcataaacatgccatatag |
28320357 |
T |
|
| Q |
166 |
tgcgggcagagcctcttatattcttccaatacgccttt |
203 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
28320358 |
tgttggcagagcctcttatgctattccaatacgccttt |
28320395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University