View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21325_low_12 (Length: 203)
Name: NF21325_low_12
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21325_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 1903450 - 1903272
Alignment:
| Q |
11 |
gtgagatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa-------tgaaaaaatatttcattgtaaggaagccaat |
103 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1903450 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatatttcattgtaaggaagccaat |
1903351 |
T |
|
| Q |
104 |
tgtgacacattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903350 |
tgtgacacattctagtaaatactatgcagca----ccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtg |
1903272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 1907683 - 1907505
Alignment:
| Q |
11 |
gtgagatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa-------tgaaaaaatatttcattgtaaggaagccaat |
103 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1907683 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatatttcattgtaaggaagccaat |
1907584 |
T |
|
| Q |
104 |
tgtgacacattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907583 |
tgtgacacattctagtaaatactatgcagca----ccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtg |
1907505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 1898150 - 1898089
Alignment:
| Q |
11 |
gtgagatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa |
72 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1898150 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatcccattaaataa |
1898089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University