View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21325_low_3 (Length: 481)
Name: NF21325_low_3
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21325_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 37290630 - 37290157
Alignment:
| Q |
16 |
atcttaaccttcgagttcctaggaaaatgtttgaagtatgtctaaaaggcttttacttctcaaaagcaaaagcttagttgtgttaacagtacatcaagat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37290630 |
atcttaaccttcgagttcctaggaaaatgtttgaagtatgtctaaaaggcttttacttctcaaaagcaaaagcttagttgtgttaacagtacatgaagat |
37290531 |
T |
|
| Q |
116 |
atcataatcaaggtttttaagaaaggtctatagttgggttgtggtttatcaagtctccgcaaccgctatttagaccacaatatgctgtgattctatgtaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37290530 |
atcataatcaaggtttttaagaaaggtctatagttgggttgtggtttatcaagtctccgcaaccgctatttagaccacaatatgctgtgattctacgtaa |
37290431 |
T |
|
| Q |
216 |
tatcaataatcgtgacattaacacaaagactaccacgatttaaaacggttattatcgaataataag-------------------cacaattttaataga |
296 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37290430 |
tatcaataatcgtgacattaacacaaagactaccatgatttaaaacggttattatcgaataataagcacatgcaaatgacattagcacaattttaataga |
37290331 |
T |
|
| Q |
297 |
tttgatttgagtgagttactaatactagaataataacctgctaaagcatcaagaagtgtggattttccagagccagatggacccataatagccaaaagcc |
396 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37290330 |
tttgatttgagtgagttactaatactataataataacctgctaaagcatcaagaagtgtggattttccagagccagatggacccataatagccaaaagcc |
37290231 |
T |
|
| Q |
397 |
ttccaggttgagcaataccagtaagaccttgaagaataggtttccttttgtgtccatttggaacagtgacccta |
470 |
Q |
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| T |
37290230 |
ttccaggttgagcaataccagtaagaccttgaagaataggtttccttttgtgtccatttggaacagtgacccta |
37290157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 37347942 - 37348005
Alignment:
| Q |
332 |
acctgctaaagcatcaagaagtgtggattttccagagccagatggacccataatagccaaaagc |
395 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||| |
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| T |
37347942 |
acctgctaaagcatcaagaagtgtagattttccacaaccagaaggacccataatagccaaaagc |
37348005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 29476669 - 29476610
Alignment:
| Q |
331 |
aacctgctaaagcatcaagaagtgtggattttccagagccagatggacccataatagcca |
390 |
Q |
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| T |
29476669 |
aacctgccaaagcatcaagaagagtagattttccagaaccagatggacccataatagcca |
29476610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 29426210 - 29426174
Alignment:
| Q |
354 |
gtggattttccagagccagatggacccataatagcca |
390 |
Q |
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| T |
29426210 |
gtggattttccagagccagaaggacccataatagcca |
29426174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 29461477 - 29461441
Alignment:
| Q |
354 |
gtggattttccagagccagatggacccataatagcca |
390 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
29461477 |
gtggattttccagagccagaaggacccataatagcca |
29461441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 37297505 - 37297437
Alignment:
| Q |
327 |
taataacctgctaaagcatcaagaagtgtggattttccagagccagatggacccataatagccaaaagc |
395 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||| |||| || |||||||| | ||||||||| |
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| T |
37297505 |
taatcacctgctaaagcatcaaggagtgtggatttgccacagcctgaaggacccattactgccaaaagc |
37297437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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