View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21325_low_6 (Length: 346)
Name: NF21325_low_6
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21325_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 50373117 - 50372805
Alignment:
| Q |
13 |
attctcacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttatctgttttctttgattacgctttat |
112 |
Q |
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| T |
50373117 |
attctaacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttaaccgttttctttgattacgctttat |
50373018 |
T |
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| Q |
113 |
gaagctgttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttgtatcaa |
212 |
Q |
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| T |
50373017 |
gaagctgttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttgtatcaa |
50372918 |
T |
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| Q |
213 |
aggtcattgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatgcacta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50372917 |
aggtcattgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatgctcta |
50372818 |
T |
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| Q |
313 |
ggctaatttaata |
325 |
Q |
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||||||||||||| |
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| T |
50372817 |
ggctaatttaata |
50372805 |
T |
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