View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21325_low_9 (Length: 267)
Name: NF21325_low_9
Description: NF21325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21325_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 2048611 - 2048854
Alignment:
| Q |
6 |
tatcattacgttcctaattttatgaatatttacatgtagttatgtctagctatcttttt-attttatttagattacaactctcc---ctctttttattga |
101 |
Q |
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| T |
2048611 |
tatcattatgttcctaattttatgaatatttacatgtagttatgtctagccatcttttttattttatttagattgcatctctcctccctctttttattgg |
2048710 |
T |
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| Q |
102 |
gtatttgctttgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacactcggcatcctatctatgtt |
201 |
Q |
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| T |
2048711 |
gtatttgctttgtggaaaactcaaataaacaaaagttggaggttggaaaaacttacagtggttcgactcttgaatcgacactcggcatcctatctatgtt |
2048810 |
T |
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| Q |
202 |
gttcatgatcacgcgcacaaattgcattaggctcctaattatatgaatatttt |
254 |
Q |
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| T |
2048811 |
gttcatgatcac---------ttgcattaggctcctaattatatgaatatttt |
2048854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 253
Target Start/End: Original strand, 2054796 - 2054937
Alignment:
| Q |
112 |
tgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacactcggcatcctatctatgttgttcatgatc |
211 |
Q |
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| T |
2054796 |
tgtggaaaactcaaataaatcgaagttcgaggttgaaaacatttacggtggttcaactcttgaaatggcgctcggcatcctagctacattgttcatgctc |
2054895 |
T |
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| Q |
212 |
acgcgcacaaattgcattaggctcctaattatatgaatattt |
253 |
Q |
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| T |
2054896 |
acttgtaccagttgcattaggctcttaattatatgaacattt |
2054937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 2083390 - 2083460
Alignment:
| Q |
183 |
tcggcatcctatctatgttgttcatgatcacgcgcacaaattgcattaggctcctaattatatgaatattt |
253 |
Q |
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| T |
2083390 |
tcggcaccctagctttattgttcaagatcactcgcaccaataacattagactcctaattatatgaatattt |
2083460 |
T |
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