View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21326_high_2 (Length: 526)
Name: NF21326_high_2
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 7414074 - 7413648
Alignment:
| Q |
19 |
tctctgacagaaactatcataagtgccaccaacatctggccaagaagtactaagatctgacttcaaactataaatctagtaaaaggaatgcaataaaaag |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7414074 |
tctctgacagaaactatcacaagtgccaccaacatctggccaagaagtactaagatctcacttcaaactataaatctagtaaaaggaatgcaataaaaag |
7413975 |
T |
|
| Q |
119 |
ccatattcta-ccatcatgacaacagaaagtcataaaaggagaatttaaataaactcacatatttgaaaacatattgcacaaatgtgaaacctgggggtt |
217 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7413974 |
tcatattctaaccatgatgacaacagaaagtcataaaatgagaatttaaataaactcacatatttgaaaacatattgcacaaatgtgaaacgtgggggtt |
7413875 |
T |
|
| Q |
218 |
gaggccacactatgtttgaaggccacaaaccatgaacggtaagtagtcttgaaacttgaggtatacaacttctttgcctcatgaaaacatttggtgtcca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7413874 |
gaggccacactatgtttgaaggccacaaaccatgaacggtaagtagtctcgaaacttgaggtatacaacttctttgcctcatgaaaacatttggtgtcca |
7413775 |
T |
|
| Q |
318 |
ttgcaaagcgagtgtgtaatggtcgaatgttggtgttgacaatagatctacaaaatatatatacatttcaacgatttgggttttttcagttagttttatt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
7413774 |
ttgcaaagcgagtgtgtaatggtcgaatgttggtgctgatgat--atctacaaaatatatatacatttcaatgatttggg-tttttcagttagttttatt |
7413678 |
T |
|
| Q |
418 |
attagggttatgcgacccggtttccccgtt |
447 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |
|
|
| T |
7413677 |
attaggattatgcgacccggtgtccccgtt |
7413648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University