View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21326_high_20 (Length: 289)
Name: NF21326_high_20
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 4124641 - 4124427
Alignment:
| Q |
1 |
aaaactatgaatagttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcacacatca |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || |
|
|
| T |
4124641 |
aaaactatgaataatttgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatataagtacaaacaaaattcacataaca |
4124542 |
T |
|
| Q |
101 |
gtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagcagaatgctggcacccgaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4124541 |
gtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagcagaatgctggcacccgaat |
4124442 |
T |
|
| Q |
201 |
attttgagcaaaaag |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4124441 |
attttgagcaaaaag |
4124427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 4124313 - 4124374
Alignment:
| Q |
210 |
aaaaagataagtacaagcacgtacgacgtgtcaccaaccttgagagtggtaataaaatattt |
271 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4124313 |
aaaaagagaagtacaagcacgtacgacgtgtcgccaaccttgagagtggtaataaaatattt |
4124374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 4360050 - 4360150
Alignment:
| Q |
13 |
agttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcacacatcagtccataaatca |
112 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||||| |||| ||||||||| |||| | ||| ||||||||| |
|
|
| T |
4360050 |
agtttgattatattacataagatccatcataaccctaacaatgaatttgtttacaatgtataatagtataaacaaaatccacatagtagtacataaatca |
4360149 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
|
|
| T |
4360150 |
a |
4360150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University