View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21326_high_21 (Length: 281)
Name: NF21326_high_21
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 37808240 - 37807986
Alignment:
| Q |
18 |
cattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctgtaaagctcaaacatcatattcacataaaatattcgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
37808240 |
cattgagcacatcaatgctgagcatgaatgatggaatggatattcttcattcaacttagcctgtaaacctcaaacatcatattcacaaaaaatattcgac |
37808141 |
T |
|
| Q |
118 |
cttaat-aaggaatatggatataactaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccacta |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808140 |
cttaattaaggaatatggatataactaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccacta |
37808041 |
T |
|
| Q |
217 |
tattattactgaagtccctatgttttggatccataagcccattttggttcctatg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808040 |
tattattactgaagtccctatgttttggatccataagcccattttggttcctatg |
37807986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 37800756 - 37800634
Alignment:
| Q |
144 |
attaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttg |
243 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||| |||| |||| |||| |||||| |||| |||| || |||||||| ||||| ||||| | |
|
|
| T |
37800756 |
attaagctaacctgaatgataaaccatagagaaaaaaagcagctgcttcctatagcacatagaacgcccaatagtttattactaaagtctgcatgttgcg |
37800657 |
T |
|
| Q |
244 |
gatccataagcccattttggttc |
266 |
Q |
| |
|
| |||||| |||||||||||||| |
|
|
| T |
37800656 |
gctccatatgcccattttggttc |
37800634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 37781479 - 37781415
Alignment:
| Q |
149 |
gctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacaccca |
213 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||| |||| |||||||||| ||||| |
|
|
| T |
37781479 |
gctaacctggataattaaccacaaagaaaaagagcaacaacttcctatggcacatggaataccca |
37781415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 37789917 - 37789794
Alignment:
| Q |
143 |
aattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgtttt |
242 |
Q |
| |
|
||||||||||||||| ||||| ||||| | |||||||||||| |||| |||| ||| || ||| |||| || |||||||||||||| ||||| | |
|
|
| T |
37789917 |
aattaagctaacctgaatgataaaccaaagagaaaaagagcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgt |
37789818 |
T |
|
| Q |
243 |
ggatccataagcccattttggttc |
266 |
Q |
| |
|
| |||||| |||||||||||||| |
|
|
| T |
37789817 |
agttccatatgcccattttggttc |
37789794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 37782863 - 37782801
Alignment:
| Q |
18 |
cattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctg |
80 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||||||| |
|
|
| T |
37782863 |
cattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaacttagcctg |
37782801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University