View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21326_high_27 (Length: 251)

Name: NF21326_high_27
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21326_high_27
NF21326_high_27
[»] chr6 (31 HSPs)
chr6 (14-233)||(27604994-27605213)
chr6 (79-233)||(28780889-28781037)
chr6 (90-233)||(28786039-28786176)
chr6 (90-195)||(26655750-26655855)
chr6 (90-195)||(26761721-26761826)
chr6 (79-233)||(27718668-27718816)
chr6 (79-233)||(27725134-27725281)
chr6 (90-233)||(26802199-26802340)
chr6 (79-233)||(27698783-27698929)
chr6 (112-233)||(27611291-27611406)
chr6 (114-233)||(28792184-28792297)
chr6 (90-233)||(27228995-27229130)
chr6 (74-195)||(27338386-27338500)
chr6 (74-195)||(27399126-27399240)
chr6 (92-177)||(26823609-26823694)
chr6 (97-226)||(27427899-27428020)
chr6 (62-188)||(26055696-26055818)
chr6 (62-187)||(26048615-26048736)
chr6 (62-187)||(26069784-26069905)
chr6 (62-187)||(26075666-26075787)
chr6 (62-187)||(26142635-26142756)
chr6 (93-187)||(25481540-25481633)
chr6 (93-187)||(25538338-25538431)
chr6 (91-189)||(27678716-27678806)
chr6 (77-187)||(25579499-25579610)
chr6 (91-185)||(27706733-27706819)
chr6 (119-195)||(31284078-31284154)
chr6 (197-233)||(26884025-26884061)
chr6 (158-228)||(26646302-26646372)
chr6 (158-228)||(26752270-26752340)
chr6 (161-194)||(25071485-25071518)
[»] scaffold0277 (2 HSPs)
scaffold0277 (79-233)||(13921-14069)
scaffold0277 (90-233)||(4960-5102)
[»] scaffold0349 (3 HSPs)
scaffold0349 (79-233)||(3711-3858)
scaffold0349 (79-233)||(8090-8238)
scaffold0349 (79-233)||(14644-14790)
[»] scaffold1254 (1 HSPs)
scaffold1254 (74-233)||(206-352)
[»] scaffold0419 (1 HSPs)
scaffold0419 (74-233)||(7277-7423)
[»] chr4 (7 HSPs)
chr4 (80-233)||(18655753-18655898)
chr4 (80-233)||(18699676-18699821)
chr4 (90-233)||(18731780-18731915)
chr4 (90-233)||(18679843-18679978)
chr4 (97-226)||(17989333-17989454)
chr4 (97-226)||(18073535-18073656)
chr4 (156-233)||(18724361-18724432)
[»] scaffold0003 (1 HSPs)
scaffold0003 (97-226)||(59343-59464)
[»] chr1 (2 HSPs)
chr1 (135-189)||(28127988-28128042)
chr1 (132-174)||(28164691-28164733)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 27605213 - 27604994
Alignment:
Q  14 cacagaccgcaaaaacttatgacaaaaataactatttcttaagaacaatttctccttgttatattaaagactccaaatcacagaccacaaaaacttactc 113  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27605213 cacagaccgcaaaaacttatgaccaaaataactatttattaagaacaatttctccttgttatattaaagactccaaatcacagaccacaaaaacttactc 27605114  T
Q  114 attcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttccta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27605113 attcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttccta 27605014  T
Q  214 tgcattcacttaccaagtgt 233  Q
    ||||||||||||||||||||    
T  27605013 tgcattcacttaccaagtgt 27604994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 28780889 - 28781037
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    |||||||  ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28780889 aaagactttaaatcacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaa 28780988  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    ||||||      ||||| |||||||||||||||| ||||||||||||||||||||    
T  28780989 ttacct------tcctcttcctcttcattttcctctgcattcacttaccaagtgt 28781037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 28786039 - 28786176
Alignment:
Q  90 atcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||         
T  28786039 atcacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcacct----- 28786133  T
Q  190 atcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
     ||||||||||||||||||||||||| |||||||||||||||||    
T  28786134 -tcctcatcctcttcattttcctatggattcacttaccaagtgt 28786176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 26655750 - 26655855
Alignment:
Q  90 atcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  26655750 atcacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcctc 26655849  T
Q  190 atcctc 195  Q
    ||||||    
T  26655850 atcctc 26655855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 26761721 - 26761826
Alignment:
Q  90 atcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  26761721 atcacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcctc 26761820  T
Q  190 atcctc 195  Q
    ||||||    
T  26761821 atcctc 26761826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 27718816 - 27718668
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    ||||||| || |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  27718816 aaagacttcacatcacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaa 27718717  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    | |||||||||||      |||||||||| ||| ||| |||||||||||||||||    
T  27718716 tcaccttcctcat------cctcttcattctcccatggattcacttaccaagtgt 27718668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 27725281 - 27725134
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    ||||||| || || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||    
T  27725281 aaagacttcacataacagaccacaaaaatttac-cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaa 27725183  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    | |||||||||||      |||||||||||||||||| |||||||||||||||||    
T  27725182 tcaccttcctcat------cctcttcattttcctatggattcacttaccaagtgt 27725134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 26802199 - 26802340
Alignment:
Q  90 atcacagaccacaaaaacttactcattcatattctgcattctcaaactc----ttttttcatccaatttctctcaattctcatggctatgcaattacctt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| ||||| ||||||||||||| |  |||     
T  26802199 atcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctcct- 26802297  T
Q  186 cctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
         |||||||||||||||||||| |||| |||||||||||||||||    
T  26802298 -----tcctcatcctcttcattttcttatggattcacttaccaagtgt 26802340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 27698929 - 27698783
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    ||||||| || |||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||    
T  27698929 aaagacttcacatcacagaacacaaaat-ttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaa 27698832  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    | |||||||||      |||| ||||||||||||||| |||||||||||||||||    
T  27698831 tcaccttcctc------atccacttcattttcctatggattcacttaccaagtgt 27698783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 27611406 - 27611291
Alignment:
Q  112 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttcc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||      ||||| || ||||||||||||    
T  27611406 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattttcatggctatgcaattagct------tcctcttcttcttcattttcc 27611313  T
Q  212 tatgcattcacttaccaagtgt 233  Q
    |||| |||||||||||||||||    
T  27611312 tatggattcacttaccaagtgt 27611291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 28792184 - 28792297
Alignment:
Q  114 attcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttccta 213  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||      |||||||||||||||||||||||    
T  28792184 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcacct------tcctcatcctcttcattttccta 28792277  T
Q  214 tgcattcacttaccaagtgt 233  Q
    || |||||||||||||||||    
T  28792278 tggattcacttaccaagtgt 28792297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 27228995 - 27229130
Alignment:
Q  90 atcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    |||||| ||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||||| |||| ||||         
T  27228995 atcacataccacaaaaacatactcattcatattctgcattctaaaactc--ttttcatccaatttctctcaagtctcatggctatacaatcacct----- 27229087  T
Q  190 atcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
     ||||| |||||||||||||||| || |||||||||||||||||    
T  27229088 -tcctcttcctcttcattttcctttggattcacttaccaagtgt 27229130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 27338500 - 27338386
Alignment:
Q  74 atattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggcta 173  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||| ||||||||||  |||||||||||||||||||||||    
T  27338500 atattaaagactccacatcacagaccacaaaaacttactcattcata-------ttctcaaacttttttttcatcttatttctctcaattctcatggcta 27338408  T
Q  174 tgcaattaccttcctcatcctc 195  Q
    |||||| || |||||| |||||    
T  27338407 tgcaatcactttcctcttcctc 27338386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 27399240 - 27399126
Alignment:
Q  74 atattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggcta 173  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||| ||||||||||  |||||||||||||||||||||||    
T  27399240 atattaaagactccacatcacagaccacaaaaacttactcattcata-------ttctcaaacttttttttcatcttatttctctcaattctcatggcta 27399148  T
Q  174 tgcaattaccttcctcatcctc 195  Q
    |||||| || |||||| |||||    
T  27399147 tgcaatcactttcctcttcctc 27399126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 26823609 - 26823694
Alignment:
Q  92 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgca 177  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  26823609 cacacaccacagtaacatactcattcatattctgcattctcaaactctttcttcgtccaatttctctcaattctcatggctatgca 26823694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 27428020 - 27427899
Alignment:
Q  97 accacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctca 196  Q
    ||||||||||| | ||||||||||||||||||||||||||||  || |||||  ||||||||||||||||||||| ||||||||||||| || ||         
T  27428020 accacaaaaacatcctcattcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctttct-at----- 27427929  T
Q  197 tcctcttcattttcctatgcattcacttac 226  Q
    ||||||||||||||||||||||||| ||||    
T  27427928 tcctcttcattttcctatgcattcagttac 27427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 26055696 - 26055818
Alignment:
Q  62 tttctccttgttatattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaa 161  Q
    ||||||||||||   ||||||| ||||  | |||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||||  |||| ||||    
T  26055696 tttctccttgtt---ttaaagaatccacctaacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaa 26055791  T
Q  162 ttctcatggctatgcaattaccttcct 188  Q
    |||||||||||||||||| ||||||||    
T  26055792 ttctcatggctatgcaatcaccttcct 26055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 26048615 - 26048736
Alignment:
Q  62 tttctccttgttatattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaa 161  Q
    ||||||||||||   ||||||| ||||  | |||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||||  |||| ||||    
T  26048615 tttctccttgtt---ttaaagaatccacctaacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaa 26048710  T
Q  162 ttctcatggctatgcaattaccttcc 187  Q
    |||||||||||||||||| |||||||    
T  26048711 ttctcatggctatgcaatcaccttcc 26048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 26069784 - 26069905
Alignment:
Q  62 tttctccttgttatattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaa 161  Q
    ||||||||||||   ||||||| ||||  | |||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||||  |||| ||||    
T  26069784 tttctccttgtt---ttaaagaatccacctaacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaa 26069879  T
Q  162 ttctcatggctatgcaattaccttcc 187  Q
    |||||||||||||||||| |||||||    
T  26069880 ttctcatggctatgcaatcaccttcc 26069905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 26075666 - 26075787
Alignment:
Q  62 tttctccttgttatattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaa 161  Q
    ||||||||||||   ||||||| ||||  | |||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||||  |||| ||||    
T  26075666 tttctccttgtt---ttaaagaatccacctaacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaa 26075761  T
Q  162 ttctcatggctatgcaattaccttcc 187  Q
    |||||||||||||||||| |||||||    
T  26075762 ttctcatggctatgcaatcaccttcc 26075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 26142635 - 26142756
Alignment:
Q  62 tttctccttgttatattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaa 161  Q
    ||||||||||||   ||||||| ||||  | |||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||||  |||| ||||    
T  26142635 tttctccttgtt---ttaaagaatccacctaacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaa 26142730  T
Q  162 ttctcatggctatgcaattaccttcc 187  Q
    |||||||||||||||||| |||||||    
T  26142731 ttctcatggctatgcaatcaccttcc 26142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 25481540 - 25481633
Alignment:
Q  93 acagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcc 187  Q
    |||||||||| ||| ||||||||||||||||| |||| ||||| | ||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  25481540 acagaccacacaaa-ttactcattcatattctccattttcaaagttttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 25481633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 25538338 - 25538431
Alignment:
Q  93 acagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcc 187  Q
    |||||||||| ||| ||| ||||||||||||| |||| ||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  25538338 acagaccacacaaa-ttaatcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 25538431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 27678716 - 27678806
Alignment:
Q  91 tcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    ||||||||||||||||||| |||||||||||||       |||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||    
T  27678716 tcacagaccacaaaaactt-ctcattcatattc-------tcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcaccttcctc 27678806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 25579499 - 25579610
Alignment:
Q  77 ttaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttt--tcatccaatttctctcaattctcatggctat 174  Q
    ||||||| ||||  |||||||||||| | | ||||||||||||||||| |||| ||||| | |||||  |||||||| |||| |||||||||||||||||    
T  25579499 ttaaagaatccacctcacagaccacacaca-ttactcattcatattctccattttcaaagtttttttattcatccaaattctttcaattctcatggctat 25579597  T
Q  175 gcaattaccttcc 187  Q
    ||||| |||||||    
T  25579598 gcaatcaccttcc 25579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 27706819 - 27706733
Alignment:
Q  91 tcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattacctt 185  Q
    ||||||||||||||||||| ||||||||||||||       ||||||||||||||||| ||||||||| || ||||||||||||||||| |||||    
T  27706819 tcacagaccacaaaaactt-ctcattcatattct-------caaactcttttttcatctaatttctctaaaatctcatggctatgcaatcacctt 27706733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 31284078 - 31284154
Alignment:
Q  119 tattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctc 195  Q
    ||||||||||||||||| ||||| ||||||||  ||||||||| ||||||||||||||||| | ||||||| |||||    
T  31284078 tattctgcattctcaaattctttcttcatccatattctctcaaatctcatggctatgcaatcatcttcctcttcctc 31284154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 26884025 - 26884061
Alignment:
Q  197 tcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    ||||||||||||||||||| |||||||||||||||||    
T  26884025 tcctcttcattttcctatggattcacttaccaagtgt 26884061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 26646302 - 26646372
Alignment:
Q  158 tcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttcctatgcattcacttacca 228  Q
    ||||||||||||||||||||||  |||||||  ||||| ||||||| | ||||||| | |||||| |||||    
T  26646302 tcaattctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctacca 26646372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 26752270 - 26752340
Alignment:
Q  158 tcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttcctatgcattcacttacca 228  Q
    ||||||||||||||||||||||  |||||||  ||||| ||||||| | ||||||| | |||||| |||||    
T  26752270 tcaattctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctacca 26752340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 25071485 - 25071518
Alignment:
Q  161 attctcatggctatgcaattaccttcctcatcct 194  Q
    |||||||||||||||||||||||||| |||||||    
T  25071485 attctcatggctatgcaattaccttcttcatcct 25071518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 14069 - 13921
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    |||||||  ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14069 aaagactttaaatcacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaa 13970  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    |||||||      |||| |||||||||||||||| ||||||||||||||||||||    
T  13969 ttacctt------cctcttcctcttcattttcctctgcattcacttaccaagtgt 13921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 5102 - 4960
Alignment:
Q  90 atcacagaccacaaaaacttactc-----attcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattacct 184  Q
    ||||||||||||||||||||| ||     |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  5102 atcacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcacct 5003  T
Q  185 tcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
          ||||||||||||||||||||||||| |||||||||||||||||    
T  5002 ------tcctcatcctcttcattttcctatggattcacttaccaagtgt 4960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 3858 - 3711
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    ||||||| || || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||    
T  3858 aaagacttcacataacagaccacaaaaatttac-cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaa 3760  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    | |||||||||||      |||||||||||||||||| |||||||||||||||||    
T  3759 tcaccttcctcat------cctcttcattttcctatggattcacttaccaagtgt 3711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 8238 - 8090
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    ||||||| || |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  8238 aaagacttcacatcacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaa 8139  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    | |||||||||||      |||||||||| ||| ||| |||||||||||||||||    
T  8138 tcaccttcctcat------cctcttcattctcccatggattcacttaccaagtgt 8090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 14790 - 14644
Alignment:
Q  79 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaa 178  Q
    ||||||| || |||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||    
T  14790 aaagacttcacatcacagaacacaaaat-ttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaa 14693  T
Q  179 ttaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    | |||||||||      |||| ||||||||||||||| |||||||||||||||||    
T  14692 tcaccttcctc------atccacttcattttcctatggattcacttaccaagtgt 14644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 352 - 206
Alignment:
Q  74 atattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggcta 173  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||||    
T  352 atattaaagactccacatcacagaccacaaaaacttactcattcatattct-------caaactcttttttcatctaatttctctcaattctcatggcta 260  T
Q  174 tgcaattaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    |||||| ||||       |||| |||||||||||||| ||||||||||||||||||||||    
T  259 tgcaatcacct------ccctcttcctcttcattttcatatgcattcacttaccaagtgt 206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 7277 - 7423
Alignment:
Q  74 atattaaagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggcta 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||    
T  7277 atattaaagactccacatcacagaccacaaaaacttactcattcatattc-------tcaaactcttttttcatctaatttctctcaattctcatggcta 7369  T
Q  174 tgcaattaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    |||||| ||||       |||| |||||||||||||| ||||||||||||||||||||||    
T  7370 tgcaatcacct------ccctcttcctcttcattttcatatgcattcacttaccaagtgt 7423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 18655898 - 18655753
Alignment:
Q  80 aagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaat 179  Q
    ||||||||| |||||| ||||||||||||||  |  ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  18655898 aagactccacatcacataccacaaaaacttaaac--tcatattctgcattctcaaactcttttttcatccagtttctctcaattttcatggctaggcaat 18655801  T
Q  180 taccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
     |||||||||||      |||||||||||||||||  |||||||||||||||||    
T  18655800 caccttcctcat------cctcttcattttcctatcgattcacttaccaagtgt 18655753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 18699821 - 18699676
Alignment:
Q  80 aagactccaaatcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaat 179  Q
    ||||||||| ||  |||||||||||||||||  |  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  18699821 aagactccacatttcagaccacaaaaacttaacc--tcatattctgcattctcaaactcttttttcatctagtttctctcaattctcatggctatgcaat 18699724  T
Q  180 taccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
     |||||||||||      |||||||||||||||||  |||||||||||||||||    
T  18699723 caccttcctcat------cctcttcattttcctatcgattcacttaccaagtgt 18699676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 18731915 - 18731780
Alignment:
Q  90 atcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    |||||| ||||||||||||||  |  ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  18731915 atcacataccacaaaaacttaaac--tcatattctgcattctcaaactcttttttcatccagtttctctcgattttcatggctatgcaatcaccttcctc 18731818  T
Q  190 atcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    ||      |||||||||||||||||  |||||||||||||||||    
T  18731817 at------cctcttcattttcctatcgattcacttaccaagtgt 18731780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 18679978 - 18679843
Alignment:
Q  90 atcacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    |||||| ||||||||||||||  |  ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||      
T  18679978 atcacataccacaaaaacttaaac--tcatattctgcattctcaaactcttttttcatccagtttctctctattttcatggctatgcaatcaccttcc-- 18679883  T
Q  190 atcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
        |||| ||||||||||||||||  |||||||||||||||||    
T  18679882 ----tcattctcttcattttcctatcgattcacttaccaagtgt 18679843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 17989454 - 17989333
Alignment:
Q  97 accacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctca 196  Q
    ||||||||||| | ||||||||||||||||||||||||||||  || |||||  ||||||||||||||||||||| ||||||||||||| || ||         
T  17989454 accacaaaaacatcctcattcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctttct-at----- 17989363  T
Q  197 tcctcttcattttcctatgcattcacttac 226  Q
    ||||||||||||||||||||||||| ||||    
T  17989362 tcctcttcattttcctatgcattcagttac 17989333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 18073535 - 18073656
Alignment:
Q  97 accacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctca 196  Q
    ||||||||||| | ||||||||||||||||||||||||||||  || |||||  ||||||||||||||||||||| ||||||||||||| || ||         
T  18073535 accacaaaaacatcctcattcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctttct-at----- 18073626  T
Q  197 tcctcttcattttcctatgcattcacttac 226  Q
    ||||||||||||||||||||||||| ||||    
T  18073627 tcctcttcattttcctatgcattcagttac 18073656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 18724432 - 18724361
Alignment:
Q  156 tctcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgt 233  Q
    |||||||||||||||||||||||| |||||||||||      |||||||||||||||||  |||||||||||||||||    
T  18724432 tctcaattctcatggctatgcaatcaccttcctcat------cctcttcattttcctatcgattcacttaccaagtgt 18724361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 59343 - 59464
Alignment:
Q  97 accacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcatcctca 196  Q
    ||||||||||| | ||||||||||||||||||||||||||||  || |||||  ||||||||||||||||||||| ||||||||||||| || ||         
T  59343 accacaaaaacatcctcattcatattctgcattctcaaactc--ttctcatcttatttctctcaattctcatggccatgcaattacctttct-at----- 59434  T
Q  197 tcctcttcattttcctatgcattcacttac 226  Q
    ||||||||||||||||||||||||| ||||    
T  59435 tcctcttcattttcctatgcattcagttac 59464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 28128042 - 28127988
Alignment:
Q  135 actcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctc 189  Q
    |||||||| ||||||||||| | |||||||||||||||||||||| || ||||||    
T  28128042 actcttttctcatccaatttttgtcaattctcatggctatgcaatcacattcctc 28127988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 28164733 - 28164691
Alignment:
Q  132 caaactcttttttcatccaatttctctcaattctcatggctat 174  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  28164733 caaactcttttctcatccaatttctgtcaattctcatggctat 28164691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University