View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_high_28 (Length: 249)
Name: NF21326_high_28
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5036993 - 5036753
Alignment:
| Q |
1 |
ccagaagaattttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaatttgaagaatcagctgtcactaaccagcaaggtcta |
100 |
Q |
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| T |
5036993 |
ccagaagaattttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaattttaagaatcagctgtcactaaccagcaaggtcta |
5036894 |
T |
|
| Q |
101 |
taactgagatcaagaaaagtatttgaaatgactttgggaaaaagttaccaggtttatgaacacaagtgttgtgttcaaaaaataagtactagaattttat |
200 |
Q |
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| T |
5036893 |
taactgagatcaagaaaagtatttgaaatgactttgggaaaaagttatcaggtttatgaacacaagtgttgtgttcaaaaaataagtactagaattttat |
5036794 |
T |
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| Q |
201 |
ttattatcaaaataatatgaagatcatcaataaagtattat |
241 |
Q |
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| T |
5036793 |
ttattatcaaaataatatgaagatcatcaataaagtattat |
5036753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5031867 - 5031628
Alignment:
| Q |
1 |
ccagaagaattttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaatttgaagaatcagctgtcactaaccagcaaggtcta |
100 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5031867 |
ccagaaaaattttgaatgggaaaaagctttgtgcatttccaaatcatcgaatggtcatcatcaatttgaagaatcagctgtcacaaaccagcaaggtcta |
5031768 |
T |
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| Q |
101 |
taactgagatcaagaaaagtatttgaaatgactttgggaaaaagttaccaggtttatgaacacaagtgttg---------------tgttcaaaaaataa |
185 |
Q |
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| T |
5031767 |
tatctgagatcaagaaaagtatttgaaatgactttgggaaaaagttatcaggtttatgagcacaagtgttgtgttttttattgttgtgttaagaaaataa |
5031668 |
T |
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| Q |
186 |
gtactagaattttatttattatcaaaataatatgaagatc |
225 |
Q |
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| T |
5031667 |
gtactagaattgtatttattatcaaaataatatgaagatc |
5031628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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