View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_high_33 (Length: 230)
Name: NF21326_high_33
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 25738763 - 25738899
Alignment:
| Q |
94 |
tcagcaattatataacttggttgaaagtattcaaattcagcaagacattgaaaagttgacaactttacaaagagtgaagaggttttgaatgataagaaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25738763 |
tcagcaattatataacttggttgaaagtattcaaattcagcaagacattgaaaagttgacaactttacaaaggttgaagaggttttgaatgataagaaag |
25738862 |
T |
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| Q |
194 |
aaga-gggggtgtataaattgaagaaaacgttgaaaa |
229 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
25738863 |
aagaggggggtgtagaaattgaagaaaacgttgaaaa |
25738899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 25747168 - 25747304
Alignment:
| Q |
94 |
tcagcaattatataacttggttgaaagtattcaaattcagcaagacattgaaaagttgacaactttacaaagagtgaagaggttttgaatgataagaaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25747168 |
tcagcaattatataacttggttgaaagtattcaaattcagcaagacattgaaaagttgacaactttacaaaggttgaagaggttttgaatgataagaaag |
25747267 |
T |
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| Q |
194 |
aaga-gggggtgtataaattgaagaaaacgttgaaaa |
229 |
Q |
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|||| ||||||||| |||||||||||||| ||||||| |
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| T |
25747268 |
aagaggggggtgtagaaattgaagaaaacattgaaaa |
25747304 |
T |
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