View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_high_4 (Length: 479)
Name: NF21326_high_4
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_high_4 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 441601 - 441365
Alignment:
| Q |
18 |
aaaaatttgccaaaccaaaacacaaaccgtaaaaagagtaacacgtaagaatgcatgcatgacttagcaccagaaaaaacggaaactcctatcaaatcac |
117 |
Q |
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| T |
441601 |
aaaaatttgccaaaccaaaacacaaaccgtcaaaagagtaacacgtaagaatgcatgcatgacttagcaccagaaaaagctgaaactcctatcaaatcac |
441502 |
T |
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| Q |
118 |
cattccattggttctcacccccatttccaaaaatttcatttcttttcaattcttacacaaacaaatcattacaaccaccatgataataacaatgacaaag |
217 |
Q |
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| T |
441501 |
cattccgttggttctcacccccatttccaaaaatttcatttctcttcaattcttacacaaacaaatcattacaaccaccatgataataacaatgacaaag |
441402 |
T |
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| Q |
218 |
accaccgcaacgcacacaaaattaaaaaccgcatatt |
254 |
Q |
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| T |
441401 |
accaccgcaacgcacacaaaattaaaacccgcatatt |
441365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 275 - 469
Target Start/End: Complemental strand, 441341 - 441147
Alignment:
| Q |
275 |
gaaccaacaaaaaagaacaaataattatgaagcatgtcacgcctcctgcatattttgaagtaaatgtgattaattctaatcgaatatggcaaacggacaa |
374 |
Q |
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| T |
441341 |
gaaccaacaaaaaagaacaaataattatgaagcatgtcacgcctcctgcatattttgaagtaaatgtgattaattctaatcgaatatggcaaacggacaa |
441242 |
T |
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| Q |
375 |
tgttataaaaactgggctcgcatacaatgccgcgacaattatcgccatcatagttgtgtctcgtttttgcttctttatctttaaaccccttcatc |
469 |
Q |
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| T |
441241 |
tgttataaaaactggggtcgcctataatgccgcgacaattgtcgccatcatagttgtgtctcgtttttgcttctttatctttaaaccccttcatc |
441147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 2485630 - 2485684
Alignment:
| Q |
25 |
tgccaaaccaaaacacaaaccgtaaaaagagtaacacgtaagaatgcatgcatga |
79 |
Q |
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| T |
2485630 |
tgccaaaccaaaaaacaaaccgttaagagagagacacgtaagaatgcatgcatga |
2485684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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