View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21326_high_5 (Length: 455)

Name: NF21326_high_5
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21326_high_5
NF21326_high_5
[»] chr2 (1 HSPs)
chr2 (9-455)||(32531417-32531862)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Original strand, 32531417 - 32531862
Alignment:
Q  9 agcagagacacaaaatggacaaacatccagaaatcagaatggtcatgaagtgggagatactcttgatctcaatttgaagctatgaaacttgaatattcat 108  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32531417 agcagagacacaaaatggacaaacatccagaactcagaatggtcatgaaatgggagatactcttgatctcaatttgaagctatgaaacttgaatattcat 32531516  T
Q  109 ctttaattttttattttataagtgatatatattcctaaatcttcacatgtagagttcttagtatgaaaaggagtataaatccttgtcatgtgtgaaatag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32531517 ctttaattttttattttataagtgatatatattcctaaatcttcacatgtagagttcttagtatgaaaaggactataaatccttgtcatgtgtgaaatag 32531616  T
Q  209 gagaacatgtgttgatttctttgtttgagtgtttttcttgatattaataactatgtactttgatgtgaccaaactctaaattgtgtgccattggggcata 308  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32531617 gagaacatgtgttgatttctttgtttgagtgtttttttttatattaataactatgtactttgatgtgaccaaactctaaattgtgtgccattggggcata 32531716  T
Q  309 tatcgcgtcgcgcagtttaaattctctactgtccgtaatagtttaaaatcgattttattattgtataatttgagccgttcaatcttaaattaacgatatc 408  Q
    ||||||||| ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32531717 tatcgcgtc-cgcagtttaaattctctaccgtttgtaatagtttaaaatcgattttattattgtataatttgagccgttcaatcttaaattaacgatatc 32531815  T
Q  409 gcgcataaatgtgtgattctgttacaaaataaaatctggatccgtga 455  Q
    | || ||||||||||||||| || |||||||||||||||||||||||    
T  32531816 gtgcgtaaatgtgtgattctctttcaaaataaaatctggatccgtga 32531862  T

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