View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_high_6 (Length: 431)
Name: NF21326_high_6
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 36285028 - 36285466
Alignment:
| Q |
1 |
tgattagatgttagagaggtgcaagaagtaggctaagatataatc--------ctagggaaattgtggaataaaaaatcttgagagttaagactaattgt |
92 |
Q |
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| T |
36285028 |
tgattagatgttagagaggtgcaagaagtaggctaagatataatcatataatcctagggaaattgtggaataaaaaatcttgagagttaagactaattgt |
36285127 |
T |
|
| Q |
93 |
gaatggcttggatgtgatgaataattgtgtaaacttaagacaatgaattggtatgttaagattaatttattctggtgatcattaaggttgatttattagg |
192 |
Q |
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| T |
36285128 |
gaatggcttggatgtgatgaataattgtgtaaacttaagataatgaattggtatgttaagattaatttattctggtgatcattaaggttgatttattagg |
36285227 |
T |
|
| Q |
193 |
gtgattttc-aaattagggaatacccttgagtgtgttagtcgattaaatggtttcgttaatcgattgttaagttaaatgattgattcagtatctattagg |
291 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36285228 |
gtgattttccaaattagggaatacccttgagtgtgttagtcgattaaatggtttcgttaatcgattgttaagttaaatgattgattcagtatctattagg |
36285327 |
T |
|
| Q |
292 |
taatgatccaatatgattgttgcattcttaattgcaggcataattatgttctctgtgctagtctgcagcattgtatcatctcgaagttttttgctggttt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36285328 |
taatgatccaatatgattgttgcattcttaattgcaggcataattatgttctctgtgctagtctgcagcattgtatcatctcgaagttttttgttggttt |
36285427 |
T |
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| Q |
392 |
tagtttgtgtgtttctcgggtgctcgcatgcttagactg |
430 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
36285428 |
tagtttctgtgtttctcgggtgctcgcatgcttagactg |
36285466 |
T |
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