View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_1 (Length: 730)
Name: NF21326_low_1
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 429 - 713
Target Start/End: Complemental strand, 7439843 - 7439559
Alignment:
| Q |
429 |
agtggaagtggcataatcactaatttacctagtggctgtttgaaatagccagaacccagaaggatgaaaaagttgagttttagttgagttgaggggtcat |
528 |
Q |
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| T |
7439843 |
agtggaagtggcataatcactaatttacctagtggctgtttgaaatagccagaacccagaaggatgaaaaagttgagttttagttgagttgaggggtcat |
7439744 |
T |
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| Q |
529 |
tcaaaaaatgctagtatggtggtaaaagtcatgaattttttatctgattggagcttcattatgttggagattgagttttgctgtattaaataataagcta |
628 |
Q |
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| T |
7439743 |
tcaaaacatgatagtatggtggtaaaagtcatgaattttttatctgattggagcttcattatgttggagattgagttttgctgtattaaataataagcta |
7439644 |
T |
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| Q |
629 |
attgaagaaagggcattgaatttgaaggtgagaatgagtgaaataatttggaagcttgattaaaacagaaggaatatattccttg |
713 |
Q |
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| T |
7439643 |
attgaagaaagggcattgaatttgaagatgagaatgggtgaaataatttggaagcttgattaaaacagaaggaatatattccttg |
7439559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 7440225 - 7440043
Alignment:
| Q |
69 |
ttttgctacagcattctaatgttttcatgttgtgttttgcttttaacatattgcattgtttcatgattactgctggtattcatgctaaaataatggatta |
168 |
Q |
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| T |
7440225 |
ttttgctacagcattctaatgttttcatgttgtgttttgctttttacatattgcattgtttcatgattactgctggtattcatgctaaaataatggatta |
7440126 |
T |
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| Q |
169 |
ggattctctacctttaggcagagaaagtcatctacctttttatttatcgctctcatcttttattttgtctcatatctttcctc |
251 |
Q |
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| T |
7440125 |
ggattctctacctttaggcagagaaagtcatctacctttttatttatcgctctcatcttttattttgtctcatatctttcctc |
7440043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 7439876 - 7439984
Alignment:
| Q |
320 |
catgtgtctcaaaataatagtcgtttaagatttttgcatgatttttnnnnnnnttattaaccgtgtcaatttcaatggtaaaattagtgatttagggtaa |
419 |
Q |
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| T |
7439876 |
catgcgtctcaaaataatagtcgtttaaggtttttgcacgatttttagaaaaatgattaaccgtgtcaatttcaatggtaaaattagtgatttagggtaa |
7439975 |
T |
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| Q |
420 |
aaaagagag |
428 |
Q |
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| T |
7439976 |
aaaagagag |
7439984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7440230 - 7440301
Alignment:
| Q |
1 |
cagaaccagtagaattccacccaaaaacaaagtagaaccaagttgaacaggataggctaatgaatctttttt |
72 |
Q |
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| T |
7440230 |
cagaaccagtagaattccacccaaaaacaaagtagaaccaagttgaacaggataggctaatgaatctttttt |
7440301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 3670039 - 3669991
Alignment:
| Q |
317 |
ctccatgtgtctcaaaataatagtcgtttaagatttttgcatgattttt |
365 |
Q |
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| T |
3670039 |
ctccatctgtctgaaaataatagtcgtttaagatttatgcatgattttt |
3669991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 39344853 - 39344916
Alignment:
| Q |
169 |
ggattctctacctttaggcagagaaagtcatctacctttttatttatcgctctcatcttttatttt |
234 |
Q |
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| T |
39344853 |
ggattctctagctttagggagggaaagtgacctacctttttatttat--ctctcatcttttatttt |
39344916 |
T |
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