View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_12 (Length: 337)
Name: NF21326_low_12
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 4116707 - 4116889
Alignment:
| Q |
16 |
tgaataattttggttccaacttatgacagacgcacgatatactcgtgatatgtgtctctcatctcttatggtacactttacaacattgaatctcaagtgt |
115 |
Q |
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| T |
4116707 |
tgaataattttggttccaacttatcacagacgcacgatatactcgtgatatgtgcatcttatctcttatggtacactttacaacattgaatttcaagtgt |
4116806 |
T |
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| Q |
116 |
actaaatattacctttcaatagagctgttgagctctttgtttccatcaactacgtcatttagcatgcatattattattaatta |
198 |
Q |
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| T |
4116807 |
actaaatatgacctttcaatagagttgttgagctctttgtttccatcaactacgtcatttagcatgcgtattattattaatta |
4116889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 208 - 337
Target Start/End: Original strand, 4119233 - 4119362
Alignment:
| Q |
208 |
gtataatgtttttgggtaatgtttgttcttgtggcaatggagcggggcgaggtggtgatggttcaagagaagacggttgtggtgacattttagtagaagt |
307 |
Q |
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| T |
4119233 |
gtataatgtttttgggtaatgtatgttcttgtggcaatggagcggggcgaggtggtgatggttcaagagaagacgtttgtggtgacattttagtagaagt |
4119332 |
T |
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| Q |
308 |
ctccagtgatgaactttgtggtgacgtttc |
337 |
Q |
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| T |
4119333 |
ctccggtgatgaactttgtggtgacgtttc |
4119362 |
T |
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