View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_13 (Length: 333)
Name: NF21326_low_13
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 7414074 - 7413919
Alignment:
| Q |
19 |
tctctgacagaaactatcataagtgccaccaacatctggccaagaagtactaagatctgacttcaaactataaatctagtaaaaggaatgcaataaaaag |
118 |
Q |
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| T |
7414074 |
tctctgacagaaactatcacaagtgccaccaacatctggccaagaagtactaagatctcacttcaaactataaatctagtaaaaggaatgcaataaaaag |
7413975 |
T |
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| Q |
119 |
ccatattct-accatcatgacaacagaaagtcataaaaggagaatttaaataaact |
173 |
Q |
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| T |
7413974 |
tcatattctaaccatgatgacaacagaaagtcataaaatgagaatttaaataaact |
7413919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 164 - 331
Target Start/End: Original strand, 7413342 - 7413508
Alignment:
| Q |
164 |
taaataaactaatcatagttaa-gtgaaactcttgattgatgtgaagttaaatatannnnnnngagcaaaatgtgaggttagatattgttgcttagagtt |
262 |
Q |
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| T |
7413342 |
taaataaactaatcatagttaaagtgaaactcttgattgatgtgaagttaaatatatttttt-gagcaaaatgtgaggttagatattgttgcttagagtt |
7413440 |
T |
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| Q |
263 |
atgataaacaaggttcttttaatataaaaattgacaacgttgcaatttaaataaggaaaatgttaaaag |
331 |
Q |
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| T |
7413441 |
atgataaacaagg-tcttttaatataaaaattgacaacgttgcattttaaataaggaaaatgttaaaag |
7413508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 7379286 - 7379216
Alignment:
| Q |
227 |
agcaaaatgtgaggttagatattgttgcttagagttatgataaacaaggttcttttaatataaaaattgaca |
298 |
Q |
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| T |
7379286 |
agcaaaatgtgaggttagatattgttgcttagagttatggtaaacaagg-tcttttaacacaaaaattgaca |
7379216 |
T |
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