View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_14 (Length: 323)
Name: NF21326_low_14
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 53 - 304
Target Start/End: Original strand, 25747317 - 25747567
Alignment:
| Q |
53 |
aaaaatatacatacattgaaatttttattgtgaaattttttggtcttgttagttagcaaactggtggcttgatcaagatccatcaaactcctattgggaa |
152 |
Q |
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| T |
25747317 |
aaaaatatacatacattgaaatttttattgtgaaattttttggtcttgttagttagcaaactggtggcttgatcaagatccatcaaactcctattgggaa |
25747416 |
T |
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| Q |
153 |
tgaaccgatcaccctgtaaagg-aaaaatatttatataaatgagaatgcaattaata----atgcatgcatgcatatgaagaaataaaaagagaagaatc |
247 |
Q |
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| T |
25747417 |
tgaaccgatcaccctgtaaaggaaaaaaaaattatataaatgagaatgcaataattaatgcatgcatgcatgcatatgaagaaataaaaagagaagaa-- |
25747514 |
T |
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| Q |
248 |
atattcataataatggaatagtagtattactgggaaatcatagagggtgggagggct |
304 |
Q |
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| T |
25747515 |
----tcataataatggaatagtagtattactgggaaatcataaagggtgggagggct |
25747567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 53 - 302
Target Start/End: Original strand, 25738912 - 25739161
Alignment:
| Q |
53 |
aaaaatatacatacattgaaatttttattgtgaaattttttggtcttgttagttagcaaactggtggcttgatcaagatccatcaaactcctattgggaa |
152 |
Q |
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| T |
25738912 |
aaaaatatacatacattgaaatttttattgtgaaattttttggtcttgttagttagcaaactggtggcttgatcaagatccatcaaactcctattgggaa |
25739011 |
T |
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| Q |
153 |
tgaaccgatcaccctgtaaagg--aaaaatatttatataaatgagaatgcaattaata----atgcatgcatgcatatgaagaaataaaaagagaagaat |
246 |
Q |
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| T |
25739012 |
tgaaccgatcaccctgtaaaggaaaaaaaaaattatataaatgagaatgcaataattaatgcatgcatgcatgcatatgaagaaataaaaagagaagaa- |
25739110 |
T |
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| Q |
247 |
catattcataataatggaatagtagtattactgggaaatcatagagggtgggaggg |
302 |
Q |
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| T |
25739111 |
-----tcataataatggaatagtagtattactgggaaatcataaagggtgggaggg |
25739161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 25738856 - 25738899
Alignment:
| Q |
14 |
aagaaagaagagggg-gtgtagaaattgaagaaaacgttgaaaa |
56 |
Q |
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| T |
25738856 |
aagaaagaagaggggggtgtagaaattgaagaaaacgttgaaaa |
25738899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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