View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_16 (Length: 305)
Name: NF21326_low_16
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 5037390 - 5037136
Alignment:
| Q |
31 |
gtccgaaattgcacctgcaataccaagttcttaggtttttacagccgtattgcagctgcaattaagctacataagcattatttgacagcattttttaacc |
130 |
Q |
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| T |
5037390 |
gtccgaaattgcacctgcaataccaagttcttaggtttttacagccgtattgcagctgcaatta-gctgcataagcattatttgaccgcattttttaacc |
5037292 |
T |
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| Q |
131 |
acatttttctatagtattaaggatcgcaattggaccacagttttgatttagaactttggtcacacatgtcttattaaaaggctaaaacttgttttgatac |
230 |
Q |
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| T |
5037291 |
acatttttctatagtattaaggatcgcaattggaccacagttttgatttagaactttggtcacacatgtcttattaaaaggctaaaacttgttttgatac |
5037192 |
T |
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| Q |
231 |
attttatagggatggaattcatttgtcacatgaggggagcaagatagtggtaaaag |
286 |
Q |
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| T |
5037191 |
attttatagggatggaattcatttgtcacatgaggggagcaagatagtggtaaaag |
5037136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 5032242 - 5031990
Alignment:
| Q |
31 |
gtccgaaattgcacctgcaataccaagttcttaggtttttacagccgtattgcagctgcaattaagct--acataagcattatttgacagcattttttaa |
128 |
Q |
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| T |
5032242 |
gtccgaaattgcagctgcaatatcaagttcttttgtttttactgccgtgttgcagccgcaattaagctgcacataagcattatttgaccgcattttttaa |
5032143 |
T |
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| Q |
129 |
ccacatttttctatagtattaaggatcgcaattggaccacagttttgatttagaactttggtcacacatgtcttattaaaaggctaaaacttgttttgat |
228 |
Q |
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| T |
5032142 |
ccacatttttctatagtattaaggatcgcgaggcgaccacagttgtgatttagaactttggttacacatatc-----aaaaggctcaaacttgttttgat |
5032048 |
T |
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| Q |
229 |
acattttatagggatggaattcatttgtcacatgaggggagcaagatagtggtaaaag |
286 |
Q |
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| T |
5032047 |
gcattttatagggatggaatttatttgtcacatgaggggagcaagatagtggtaaaag |
5031990 |
T |
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