View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21326_low_17 (Length: 304)

Name: NF21326_low_17
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21326_low_17
NF21326_low_17
[»] chr2 (1 HSPs)
chr2 (22-304)||(32531843-32532122)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 32532122 - 32531843
Alignment:
Q  22 aggtcattattgacacacgtgctattggggatagtaagggccctacaactctttctgtcaattttttatgacagtttctgctaattattttagagccata 121  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32532122 aggtcattattgacacacgtgctattggggatggtaagggccctacaactctttctgtcaattttttatgacagtttctgctaattattttagagccata 32532023  T
Q  122 atgatggatatcagattttgggacccacagaacacagatagag-aacataacatagaacaatcagattcctccacagcccacatgcataagtttgttac- 219  Q
    |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  32532022 atgatggatatcagattttgggacccacagaacacaaagagagaaacataacatagaacaatcagattcctccacagcccacatgcaaaagtttgttaca 32531923  T
Q  220 -aactccagttcctgtccctgactcagaccacagattgcaaaatccagcaaaagaatgaggaaaattcacggatccagattttatt 304  Q
     ||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32531922 aaactccagtt------cctgactcagaccacagattgcaaaatccagcaaaagaatgaggaaaattcacggatccagattttatt 32531843  T

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