View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_19 (Length: 294)
Name: NF21326_low_19
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 835074 - 835373
Alignment:
| Q |
1 |
tactgggattcaatgtaaaccccgtggtaccaagttcgattcatactnnnnnnntagannnnnnnctccttttgtgacttgccataatttcaaattggtt |
100 |
Q |
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| T |
835074 |
tactgggattcaatgtaaaccccgtggtaccaagttcgattcatactaaaaaaatagatttttttctccttttgtgacttgccataatttcaaattggtt |
835173 |
T |
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| Q |
101 |
gattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgttctgcacaatgattggtattgatacctagca---- |
196 |
Q |
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| T |
835174 |
gattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgttctgcacaatgattggtattgatacctagcatacc |
835273 |
T |
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| Q |
197 |
------------taacaaatagtactattagtaatatattgctcctctcaatcactaatacatggaatgaatttgtaattcttacatctactggcctttg |
284 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
835274 |
taaagtcttttctaacaaatagtactgttagtaatatattgctcctctcaatcactaatacatggaatgaatttgtaattcttacatctactggcctttg |
835373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 813443 - 813547
Alignment:
| Q |
79 |
ttgccataatttcaaattggttgattctggatatatgagttcttt-tttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
177 |
Q |
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|||| ||| |||||||||||||||||||||||| || | |||||| ||||||||| ||| |||||| |||| | ||||| ||||||||||||||||| | |
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| T |
813443 |
ttgcaatagtttcaaattggttgattctggatacatcacttctttctttcataacgtta--tatacactagatcctctctaggaatgttctgcacaataa |
813540 |
T |
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| Q |
178 |
ttggtat |
184 |
Q |
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||||||| |
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| T |
813541 |
ttggtat |
813547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 813597 - 813628
Alignment:
| Q |
244 |
acatggaatgaatttgtaattcttacatctac |
275 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
813597 |
acatggaatgaatttgtaattcttacatctac |
813628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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