View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_2 (Length: 549)
Name: NF21326_low_2
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 10 - 549
Target Start/End: Complemental strand, 835888 - 835350
Alignment:
| Q |
10 |
aagaatatggaaaataagtagcttaccctagaggcaaagaaatagaagcaggacccgaaaactctccgggttgaattgctttcagatttgaaccaaataa |
109 |
Q |
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| T |
835888 |
aagaaaatggaaaataagtagcttaccctagaggcaaagaaatagaagcaggacccgaaaactctccgggttgaatttctttcagatttgaaccaaataa |
835789 |
T |
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| Q |
110 |
tattttagcttcgttcaagaatgagacggaataaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttg |
209 |
Q |
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| T |
835788 |
tattttagcttcgttcaagaatgagacggaataaaacggcctgacaaagtcatgatggtcaatgtgaggaggaatgcagtcccctacatcatatatgttg |
835689 |
T |
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| Q |
210 |
acaatgcaactgtcaggaacacacgtcggaggaattatgttccatctaaccattctctttatcatttgcttgaacacgtccggcaaaggatcaacctctt |
309 |
Q |
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| T |
835688 |
acaatgcaactgtcaggaacacacgtcggaggaattatgttccatctaaccattctctttatcatttgcttgaacacgtccggcaaaggatcaacctctt |
835589 |
T |
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| Q |
310 |
cagttctacatataccaggagggttgccatatttgtcctgcaacattttacaaaagtaataagtatcaaatagtaactactaactagagatgaaaactaa |
409 |
Q |
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| T |
835588 |
cagttctacatataccaggagggttaccatatttgtcctgcaacattttacaaaagtaataagtatcaaatagtaact----actagagatgaaaactaa |
835493 |
T |
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| Q |
410 |
---aatgcaccttaattacttaccactgcataattgtagcagcaaccaaattgcagggtttcacgtcctttacctcgcatccactttctaggtttcgagt |
506 |
Q |
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| T |
835492 |
aataatgcaccttaattacttaccactgcataattgtagcagcagccaaattgcagggtttcacgtcctttacctcgcatccactttctaggtttcgagt |
835393 |
T |
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| Q |
507 |
atgttctatctgtgaacaacaaaggccagtagatgtaagaatt |
549 |
Q |
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| T |
835392 |
atgttctatctgtgaacaacaaaggccagtagatgtaagaatt |
835350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 42 - 549
Target Start/End: Complemental strand, 814123 - 813614
Alignment:
| Q |
42 |
ggcaaagaaatagaagcaggacccgaaaactctccgggttgaattgctttcagatttgaaccaaataatattttagcttcgttcaagaatgagacggaat |
141 |
Q |
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| T |
814123 |
ggcaaagaaatcgaagcgggaccaaaaaactctcctggacgaacagctttcaaatttgaaccaaataatattttagctttgttcaagaaagagacggaat |
814024 |
T |
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| Q |
142 |
aaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtcaggaacacacgtcggagg |
241 |
Q |
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| T |
814023 |
aaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtcaggaacacacgtcggagg |
813924 |
T |
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| Q |
242 |
aattatgttccatctaaccattctctttatcatttgcttgaacacgtccggcaaaggatcaacctcttcagttctacatataccaggagggttgccatat |
341 |
Q |
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| T |
813923 |
aattattttccatctaaccatcctctttatcatttgcttgaacatgcgtggtaatggatcaacctcttcagttctacttataccaggggggttaccattt |
813824 |
T |
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| Q |
342 |
ttgtcctgcaacattttacaaaagtaataagtatcaaatagtaactactaactagagatgaaaactaaaat---gcaccttaattacttaccactgcata |
438 |
Q |
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| T |
813823 |
ttgtcctgcaacattttacaaaaataattagtatcaattagtaactactaactagagatgaaaactgaaatcaacaaccttaattacttaccactgcata |
813724 |
T |
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| Q |
439 |
attgtagcagcaaccaaattgcagggtttcacgtcctttacctcgcatccactttctaggtttcgagtatgttctatctgtgaacaacaaaggccagtag |
538 |
Q |
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| T |
813723 |
gttgtagcagcaaccaaattgtagggtttcacgtcctttacctcgcatccactttctaggttttgaatatgttctttctgtgaacaataaagg-cggtag |
813625 |
T |
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| Q |
539 |
atgtaagaatt |
549 |
Q |
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| T |
813624 |
atgtaagaatt |
813614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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